Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F0U61_RS11065 Genome accession   NZ_CP043493
Coordinates   2662804..2664165 (-) Length   453 a.a.
NCBI ID   WP_395817703.1    Uniprot ID   -
Organism   Archangium violaceum strain Cbvi 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2657804..2669165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U61_RS11050 (F0U61_11015) - 2659294..2660766 (-) 1473 WP_395839613.1 ATP-binding protein -
  F0U61_RS11055 (F0U61_11020) - 2661089..2661964 (+) 876 WP_395839616.1 hypothetical protein -
  F0U61_RS11060 (F0U61_11025) - 2661991..2662794 (+) 804 WP_395839619.1 hypothetical protein -
  F0U61_RS11065 (F0U61_11030) radA 2662804..2664165 (-) 1362 WP_395817703.1 DNA repair protein RadA Machinery gene
  F0U61_RS11070 (F0U61_11035) - 2664371..2664640 (+) 270 WP_395817706.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  F0U61_RS11075 (F0U61_11040) bioB 2664801..2665832 (+) 1032 WP_395817708.1 biotin synthase BioB -
  F0U61_RS11080 (F0U61_11045) bioF 2665833..2667038 (+) 1206 WP_395839621.1 8-amino-7-oxononanoate synthase -
  F0U61_RS11085 (F0U61_11050) bioD 2667087..2667800 (+) 714 WP_395817714.1 dethiobiotin synthase -
  F0U61_RS11090 (F0U61_11055) - 2667867..2668184 (+) 318 WP_395825185.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48201.45 Da        Isoelectric Point: 6.8243

>NTDB_id=384577 F0U61_RS11065 WP_395817703.1 2662804..2664165(-) (radA) [Archangium violaceum strain Cbvi 34]
MAKAKTHYTCQACGYQSAKWLGKCPDCGAWSSLVEETEAKVDEKRPAWGASGGASKPVRLREVSGEQEERRRTGIAEFDR
VLGGGVVDGSLVLLGGDPGIGKSTLLLAALDRLGRWGPVLYVSGEESLRQTKMRAERLRVESEAIHLFAETDADRVLAVA
EGLKPRALVVDSIQTMYLPELGSAPGSISQVREVAGRFMAFAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVPDPSALFLAERPAGKAGSVVTCTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEDIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLEAHTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRAIIPKGSARRLEDTKLEVVGVETLSEALGAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=384577 F0U61_RS11065 WP_395817703.1 2662804..2664165(-) (radA) [Archangium violaceum strain Cbvi 34]
ATGGCGAAGGCGAAGACGCACTACACGTGTCAGGCATGCGGGTACCAGTCAGCGAAGTGGTTGGGGAAGTGCCCCGACTG
CGGCGCGTGGAGCTCGCTGGTGGAGGAGACCGAGGCGAAGGTGGACGAGAAGCGCCCGGCATGGGGGGCCTCGGGAGGGG
CGTCCAAGCCGGTGCGGCTGCGCGAGGTGAGCGGCGAGCAAGAGGAGCGTCGACGCACGGGCATTGCCGAGTTCGACCGG
GTGCTCGGAGGCGGAGTGGTGGACGGCTCGCTGGTGTTGCTGGGAGGAGACCCAGGCATCGGCAAGTCCACGCTGCTGCT
GGCGGCGCTGGACAGGCTGGGGCGCTGGGGCCCGGTGCTCTACGTGTCGGGCGAGGAGTCGCTGCGGCAGACGAAGATGC
GGGCCGAGCGGCTACGGGTAGAGAGCGAGGCCATCCACCTCTTCGCGGAGACGGACGCGGACCGGGTGCTGGCGGTGGCA
GAGGGCCTCAAGCCGCGGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAGCGCGCCGGGGAG
CATCTCGCAGGTGCGCGAGGTGGCGGGGCGCTTCATGGCCTTCGCCAAACGCAGCGGGGTGCCCACGTTCCTGGTGGGGC
ACGTGACGAAGGAAGGCTCCATCGCGGGCCCGCGCGTGCTGGAGCACATGGTGGACACAGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCCTTCCGGATTCTGCGAGCGCACAAGAACCGCTTCGGCTCGACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGCCGGATCCGTCGGCGCTCTTCCTGGCGGAGCGGCCCGCGGGCAAGGCGGGCAGCGTGG
TGACGTGCACGCTGAACGGCACACGGCCGCTGCTGGTGGAGGTACAGGCGCTGGTGGCGCCCACGGGCTACGGCACGGCG
AGACGCACGGCCATTGGCGTGGATGGCAACCGTGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGACATCCCGCT
GGTGGGATGCGATCTCTTTGTGAACGTGGCGGGAGGCATGCAGCTGTCCGAGCCGGCCTGCGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTGCAGAACCGACCGCTGGAGGCGCACACGCTGGTGCTGGGCGAGGTAGGCCTTGCGGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGCGACTCGCCGAGGCGGCGAAGATGGGCTTTCAGCGGGCCATCATCCCGAAGGGGAG
CGCGCGGCGACTGGAGGACACGAAGCTGGAGGTCGTGGGCGTGGAGACGCTCTCCGAGGCACTGGGAGCGATGTTCGACT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-425)

AAA domain (AAA_25)

(74-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.204

99.779

0.541
  radA Streptococcus pneumoniae Rx1

53.524

100

0.536
  radA Streptococcus pneumoniae D39

53.524

100

0.536
  radA Streptococcus pneumoniae R6

53.524

100

0.536
  radA Streptococcus pneumoniae TIGR4

53.524

100

0.536
  radA Streptococcus mitis SK321

53.304

100

0.534
  radA Streptococcus mitis NCTC 12261

52.98

100

0.53

Multiple sequence alignment