Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG570_RS00515 Genome accession   NZ_CP051497
Coordinates   103594..104052 (-) Length   152 a.a.
NCBI ID   WP_202141793.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-007     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 98594..109052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG570_RS00500 (HG570_00500) - 99021..99800 (-) 780 WP_202141790.1 glycosyltransferase family 2 protein -
  HG570_RS00505 (HG570_00505) tlpB 99831..101528 (-) 1698 WP_202141791.1 methyl-accepting chemotaxis protein TlpB -
  HG570_RS00510 (HG570_00510) - 101714..103459 (-) 1746 WP_202141792.1 5'-nucleotidase C-terminal domain-containing protein -
  HG570_RS00515 (HG570_00515) luxS 103594..104052 (-) 459 WP_202141793.1 S-ribosylhomocysteine lyase Regulator
  HG570_RS00520 (HG570_00520) - 104090..105232 (-) 1143 WP_202141794.1 cystathionine gamma-synthase -
  HG570_RS00525 (HG570_00525) - 105261..106178 (-) 918 WP_202141795.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG570_RS00530 (HG570_00530) - 106317..106847 (+) 531 WP_237393321.1 hypothetical protein -
  HG570_RS00535 (HG570_00535) dnaK 106987..108849 (-) 1863 WP_097720555.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17336.74 Da        Isoelectric Point: 6.4914

>NTDB_id=384574 HG570_RS00515 WP_202141793.1 103594..104052(-) (luxS) [Helicobacter pylori strain PUNO-007]
MKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIIKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVIDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLAHAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=384574 HG570_RS00515 WP_202141793.1 103594..104052(-) (luxS) [Helicobacter pylori strain PUNO-007]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACATGCCAAGCT
TGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTTATAGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGCTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCGC
AGAATTTAGCACACGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.857

92.105

0.395