Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F0U62_RS09355 Genome accession   NZ_CP043492
Coordinates   2233217..2234578 (-) Length   453 a.a.
NCBI ID   WP_395854838.1    Uniprot ID   -
Organism   Cystobacter fuscus strain Cbf 8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2228217..2239578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U62_RS09340 (F0U62_09355) - 2228344..2229513 (+) 1170 WP_395854835.1 efflux RND transporter periplasmic adaptor subunit -
  F0U62_RS09345 (F0U62_09360) - 2229535..2232693 (+) 3159 WP_395854836.1 efflux RND transporter permease subunit -
  F0U62_RS09350 (F0U62_09365) - 2232942..2233121 (+) 180 WP_395854837.1 hypothetical protein -
  F0U62_RS09355 (F0U62_09370) radA 2233217..2234578 (-) 1362 WP_395854838.1 DNA repair protein RadA Machinery gene
  F0U62_RS09360 (F0U62_09375) - 2234765..2235034 (+) 270 WP_395845409.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  F0U62_RS09365 (F0U62_09380) bioB 2235181..2236212 (+) 1032 WP_395854839.1 biotin synthase BioB -
  F0U62_RS09370 (F0U62_09385) bioF 2236209..2237381 (+) 1173 WP_395854840.1 8-amino-7-oxononanoate synthase -
  F0U62_RS09375 (F0U62_09390) bioD 2237395..2238108 (+) 714 WP_395854841.1 dethiobiotin synthase -
  F0U62_RS09380 (F0U62_09395) - 2238212..2238490 (+) 279 WP_395845413.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48039.17 Da        Isoelectric Point: 6.7595

>NTDB_id=384564 F0U62_RS09355 WP_395854838.1 2233217..2234578(-) (radA) [Cystobacter fuscus strain Cbf 8]
MAKAKTHYACQACGYQSAKWLGKCPDCGAWSSLVEETETKVDEKRPAWGASGGASKPVRLREVSGEQEQRRHTGIAEFDR
VLGGGVVDGSLVLLGGDPGIGKSTLLLAALDRLGHAGPVLYVSGEESLRQTKMRAERLRVEGESIHLFAETDADRVLSVA
ESLKPRALVVDSIQTMYLPELGSAPGSISQVREVAGRFMAFAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLAERPAGKAGSVVTCTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEDIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLEAHTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRAVIPKGSARRLEDSKLEVIGVETLSEALGAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=384564 F0U62_RS09355 WP_395854838.1 2233217..2234578(-) (radA) [Cystobacter fuscus strain Cbf 8]
ATGGCGAAGGCGAAGACGCATTACGCGTGTCAGGCATGCGGGTACCAGTCGGCGAAGTGGTTGGGCAAATGCCCTGACTG
CGGCGCGTGGAGCTCGCTGGTGGAGGAGACGGAGACGAAGGTGGACGAGAAGCGCCCGGCCTGGGGCGCCTCGGGCGGAG
CCTCCAAGCCGGTGCGGCTGCGCGAGGTGAGCGGCGAGCAGGAGCAGCGTCGGCACACGGGCATCGCCGAGTTCGACCGG
GTCCTCGGCGGCGGAGTGGTGGACGGCTCGCTGGTGCTGCTCGGCGGAGACCCTGGCATCGGCAAGTCCACGCTGCTGCT
CGCCGCGTTGGATCGGCTGGGCCACGCGGGCCCGGTGCTCTACGTGTCGGGCGAGGAGTCCCTGCGACAGACGAAGATGC
GCGCCGAGCGCCTCCGGGTGGAGGGCGAGTCCATCCACCTCTTCGCGGAGACGGACGCGGACCGGGTGCTCTCGGTGGCC
GAGTCGCTCAAGCCCCGAGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAGCGCGCCGGGGAG
CATCTCCCAGGTGCGCGAGGTGGCCGGACGCTTCATGGCCTTCGCCAAGCGCAGCGGCGTGCCCACCTTCCTCGTGGGCC
ACGTAACGAAGGAGGGCTCCATCGCGGGCCCGCGCGTGCTCGAGCACATGGTGGACACCGTGCTCTACTTCGAGGGCGAG
CGCGGTCACCCTTTCCGCATTCTGCGGGCGCACAAGAACCGCTTCGGCTCGACGAACGAGATTGGCGTCTTCGAGATGAA
GGGAGCGGGGCTCGTGGAGGTGGCCGACCCCTCGGCGCTCTTCCTCGCCGAGCGCCCGGCGGGCAAGGCGGGCAGCGTGG
TGACGTGCACGCTCAATGGCACGCGCCCCCTCCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACCGGCTACGGCACCGCG
CGGCGCACGGCCATCGGCGTGGATGGCAACCGCGTGGCCCTGCTCGCCGCGGTGCTGGAGAAGAAGGAGGACATTCCCCT
GGTGGGCTGCGACCTCTTCGTCAACGTGGCCGGCGGCATGCAGCTGTCCGAGCCGGCGTGTGATCTGGCGGTGTGCGCGG
CCCTGGTGAGCAGCCTGCAGAACCGGCCGCTCGAGGCGCATACCCTGGTGCTCGGCGAGGTGGGACTGGCCGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGCGGCTCGCCGAGGCGGCGAAGATGGGCTTCCAGCGCGCCGTCATTCCCAAGGGCAG
CGCCCGGCGGCTCGAGGACTCCAAGCTGGAGGTGATCGGCGTGGAGACCCTGTCCGAGGCGCTCGGCGCCATGTTCGACT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-219)

Subunit ChlI of Mg-chelatase (ChlI)

(352-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.646

99.779

0.545
  radA Streptococcus mitis NCTC 12261

53.201

100

0.532
  radA Streptococcus pneumoniae Rx1

53.201

100

0.532
  radA Streptococcus pneumoniae D39

53.201

100

0.532
  radA Streptococcus pneumoniae R6

53.201

100

0.532
  radA Streptococcus pneumoniae TIGR4

53.201

100

0.532
  radA Streptococcus mitis SK321

52.98

100

0.53

Multiple sequence alignment