Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG571_RS06735 Genome accession   NZ_CP051496
Coordinates   1404817..1406130 (-) Length   437 a.a.
NCBI ID   WP_202140601.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-008     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1399817..1411130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG571_RS08020 - 1400100..1400255 (-) 156 WP_237392991.1 hypothetical protein -
  HG571_RS06705 (HG571_06710) nadC 1400280..1401101 (-) 822 WP_202140596.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG571_RS06710 (HG571_06715) nadA 1401101..1402111 (-) 1011 WP_202140597.1 quinolinate synthase NadA -
  HG571_RS06715 (HG571_06720) - 1402101..1402904 (-) 804 WP_202140598.1 phosphatidylserine decarboxylase -
  HG571_RS06720 (HG571_06725) - 1402901..1403404 (-) 504 WP_000953077.1 hypothetical protein -
  HG571_RS06725 (HG571_06730) - 1403417..1403911 (-) 495 WP_202140599.1 hypothetical protein -
  HG571_RS06730 (HG571_06735) mqnP 1403904..1404788 (-) 885 WP_202140600.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG571_RS06735 (HG571_06740) comEC/comE3 1404817..1406130 (-) 1314 WP_202140601.1 ComEC/Rec2 family competence protein Machinery gene
  HG571_RS06740 (HG571_06745) - 1406127..1407587 (-) 1461 WP_202140602.1 replicative DNA helicase -
  HG571_RS06745 (HG571_06750) - 1407598..1408992 (-) 1395 WP_202140603.1 NAD(P)H-hydrate dehydratase -
  HG571_RS06750 (HG571_06755) crdS 1408995..1410197 (-) 1203 WP_202141261.1 copper-sensing histidine kinase CrdS -
  HG571_RS06755 (HG571_06760) crdR 1410163..1410804 (-) 642 WP_202140604.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50146.15 Da        Isoelectric Point: 9.8368

>NTDB_id=384560 HG571_RS06735 WP_202140601.1 1404817..1406130(-) (comEC/comE3) [Helicobacter pylori strain PUNO-008]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKASSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=384560 HG571_RS06735 WP_202140601.1 1404817..1406130(-) (comEC/comE3) [Helicobacter pylori strain PUNO-008]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCACTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGTGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCATTTATTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATTGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAGCCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95