Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HG571_RS04965 Genome accession   NZ_CP051496
Coordinates   1051689..1052924 (-) Length   411 a.a.
NCBI ID   WP_202140394.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1046689..1057924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG571_RS04925 (HG571_04920) - 1046808..1048535 (-) 1728 WP_202140390.1 type IV secretory system conjugative DNA transfer family protein -
  HG571_RS04930 (HG571_04925) - 1048536..1049093 (-) 558 WP_202140391.1 hypothetical protein -
  HG571_RS04935 (HG571_04930) - 1049094..1049384 (-) 291 WP_202140392.1 hypothetical protein -
  HG571_RS04940 (HG571_04935) - 1049381..1049836 (-) 456 WP_202140393.1 mobilization protein -
  HG571_RS04945 (HG571_04940) - 1049833..1050774 (-) 942 WP_000625128.1 ATPase, T2SS/T4P/T4SS family -
  HG571_RS04950 (HG571_04945) - 1050774..1051073 (-) 300 WP_000660135.1 hypothetical protein -
  HG571_RS04955 (HG571_04950) - 1051070..1051333 (-) 264 WP_000564647.1 hypothetical protein -
  HG571_RS04960 (HG571_04955) - 1051326..1051619 (-) 294 WP_097557219.1 hypothetical protein -
  HG571_RS04965 (HG571_04960) comB10 1051689..1052924 (-) 1236 WP_202140394.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG571_RS04970 (HG571_04965) - 1052921..1054463 (-) 1543 Protein_988 TrbG/VirB9 family P-type conjugative transfer protein -
  HG571_RS04975 (HG571_04970) - 1054460..1055449 (-) 990 WP_202140396.1 VirB8/TrbF family protein -
  HG571_RS08080 - 1055451..1055579 (-) 129 WP_000243255.1 hypothetical protein -
  HG571_RS04980 (HG571_04975) - 1055579..1057513 (-) 1935 WP_202140397.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46457.52 Da        Isoelectric Point: 9.9480

>NTDB_id=384556 HG571_RS04965 WP_202140394.1 1051689..1052924(-) (comB10) [Helicobacter pylori strain PUNO-008]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKVVNVSQGKFPTSSYLFQAYEGVKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNDIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=384556 HG571_RS04965 WP_202140394.1 1051689..1052924(-) (comB10) [Helicobacter pylori strain PUNO-008]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGTTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCGTTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACACAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATCCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAGAATAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATGATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

45.34

96.594

0.438