Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F0U63_RS08645 Genome accession   NZ_CP043491
Coordinates   2069986..2071347 (-) Length   453 a.a.
NCBI ID   WP_095984867.1    Uniprot ID   A0A250IYL9
Organism   Cystobacter fuscus strain Cbf 10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2064986..2076347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U63_RS08630 (F0U63_08715) - 2065177..2066346 (+) 1170 WP_395845406.1 efflux RND transporter periplasmic adaptor subunit -
  F0U63_RS08635 (F0U63_08720) - 2066368..2069523 (+) 3156 WP_395845407.1 efflux RND transporter permease subunit -
  F0U63_RS08640 (F0U63_08725) - 2069664..2069885 (+) 222 WP_395845408.1 hypothetical protein -
  F0U63_RS08645 (F0U63_08730) radA 2069986..2071347 (-) 1362 WP_095984867.1 DNA repair protein RadA Machinery gene
  F0U63_RS08650 (F0U63_08735) - 2071534..2071803 (+) 270 WP_395845409.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  F0U63_RS08655 (F0U63_08740) bioB 2071950..2072981 (+) 1032 WP_395845410.1 biotin synthase BioB -
  F0U63_RS08660 (F0U63_08745) bioF 2072978..2074150 (+) 1173 WP_395845411.1 8-amino-7-oxononanoate synthase -
  F0U63_RS08665 (F0U63_08750) bioD 2074164..2074877 (+) 714 WP_395845412.1 dethiobiotin synthase -
  F0U63_RS08670 (F0U63_08755) - 2074981..2075259 (+) 279 WP_395845413.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48025.15 Da        Isoelectric Point: 6.7594

>NTDB_id=384550 F0U63_RS08645 WP_095984867.1 2069986..2071347(-) (radA) [Cystobacter fuscus strain Cbf 10]
MAKAKTHYACQACGYQSAKWLGKCPDCGAWSSLVEETETKVDEKRPAWGASGGASKPVRLREVSGEQEQRRHTGIAEFDR
VLGGGVVDGSLVLLGGDPGIGKSTLLLAALDRLGHAGPVLYVSGEESLRQTKMRAERLRVEGEAIHLFAETDADRVLSVA
ESLKPRALVVDSIQTMYLPELGSAPGSISQVREVAGRFMAYAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLAERPAGKAGSVVTCTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEDIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLEAHTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRAVIPKGSARRLEDSKLEVVGVETLSEALGAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=384550 F0U63_RS08645 WP_095984867.1 2069986..2071347(-) (radA) [Cystobacter fuscus strain Cbf 10]
ATGGCGAAGGCGAAGACGCATTACGCGTGTCAGGCATGCGGGTACCAGTCGGCGAAGTGGTTGGGGAAGTGCCCTGACTG
CGGCGCGTGGAGCTCGCTGGTGGAGGAGACCGAGACGAAGGTGGACGAGAAGCGCCCGGCCTGGGGCGCCTCGGGCGGAG
CCTCCAAGCCGGTGCGGCTGCGCGAGGTGAGCGGCGAGCAGGAGCAGCGCCGGCACACGGGCATCGCCGAGTTCGACCGG
GTCCTCGGCGGCGGAGTGGTGGACGGCTCGCTGGTGCTGCTCGGCGGAGACCCCGGCATCGGCAAGTCCACGCTGCTGCT
CGCCGCGCTGGATCGGCTGGGCCACGCGGGCCCGGTGCTCTACGTGTCGGGCGAGGAGTCGCTGCGGCAGACGAAGATGC
GCGCCGAGCGCCTCCGGGTGGAGGGCGAGGCCATCCACCTCTTCGCGGAGACGGACGCGGACCGGGTGCTCTCGGTGGCC
GAGTCGCTCAAGCCCCGGGCCCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAGCGCGCCGGGGAG
CATCTCCCAGGTGCGCGAGGTGGCCGGGCGCTTCATGGCCTACGCCAAGCGCAGCGGCGTGCCCACCTTCCTCGTGGGCC
ACGTGACGAAGGAGGGCTCCATCGCGGGCCCGCGCGTGCTCGAGCACATGGTGGACACCGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCCTTCCGGATTCTGCGGGCGCACAAGAACCGCTTCGGCTCGACGAACGAGATTGGAGTCTTCGAGATGAA
GGGAGCGGGGCTCGTGGAGGTGGCCGACCCCTCGGCGCTCTTCCTCGCCGAGCGCCCGGCGGGCAAGGCGGGCAGCGTGG
TGACGTGCACGCTCAATGGCACGCGCCCCCTGCTGGTGGAGGTGCAGGCGCTGGTGGCACCCACGGGCTACGGCACCGCG
CGGCGCACGGCCATCGGCGTGGACGGCAACCGCGTGGCCCTGCTCGCCGCGGTGCTGGAGAAGAAGGAGGACATTCCGCT
GGTGGGCTGCGACCTCTTCGTCAACGTGGCCGGAGGCATGCAGTTGTCCGAGCCGGCGTGTGACCTGGCGGTGTGCGCGG
CCCTGGTGAGCAGCCTGCAGAACCGGCCGCTCGAGGCGCATACCCTGGTGCTCGGCGAGGTGGGACTCGCGGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGCGGCTCGCCGAGGCGGCGAAGATGGGCTTCCAGCGCGCCGTCATCCCCAAGGGCAG
CGCCCGGCGGCTCGAGGACTCCAAGCTGGAGGTGGTCGGCGTGGAGACGCTGTCCGAGGCGCTCGGCGCCATGTTCGACT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-219)

Subunit ChlI of Mg-chelatase (ChlI)

(352-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A250IYL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.204

99.779

0.541
  radA Streptococcus mitis NCTC 12261

52.98

100

0.53
  radA Streptococcus pneumoniae Rx1

52.98

100

0.53
  radA Streptococcus pneumoniae D39

52.98

100

0.53
  radA Streptococcus pneumoniae R6

52.98

100

0.53
  radA Streptococcus pneumoniae TIGR4

52.98

100

0.53
  radA Streptococcus mitis SK321

52.759

100

0.528

Multiple sequence alignment