Detailed information NTG0038455

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: CVCAS_RS05015
• Genome accession: NC_017486
• Coordinates: 1018939..1019619 (+)
• Length: 226 a.a.
• NCBI ID: WP_003131898.1
• Uniprot ID: Q9CGT5
• Organism: Lactococcus lactis subsp. lactis CV56
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1013939..1024619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVCAS_RS04995 (CVCAS_0970)	-	1014303..1014818 (+)	516	WP_003131889.1	DUF2127 domain-containing protein	-
CVCAS_RS05000 (CVCAS_0971)	-	1014822..1016147 (+)	1326	WP_003131891.1	cell wall metabolism sensor histidine kinase WalK	-
CVCAS_RS05005 (CVCAS_0972)	-	1016154..1016810 (+)	657	WP_003131894.1	phosphatase PAP2 family protein	-
CVCAS_RS05010 (CVCAS_0973)	glmS	1016991..1018808 (+)	1818	WP_010905678.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
CVCAS_RS05015 (CVCAS_0974)	radC	1018939..1019619 (+)	681	WP_003131898.1	DNA repair protein RadC	Machinery gene
CVCAS_RS05020 (CVCAS_0975)	-	1019818..1020942 (-)	1125	WP_014570526.1	site-specific integrase	-
CVCAS_RS05025 (CVCAS_0976)	-	1021068..1021559 (-)	492	WP_014570527.1	hypothetical protein	-
CVCAS_RS05030 (CVCAS_0977)	-	1021620..1022057 (-)	438	WP_003131902.1	ImmA/IrrE family metallo-endopeptidase	-
CVCAS_RS05035 (CVCAS_0978)	-	1022054..1022572 (-)	519	WP_043991139.1	helix-turn-helix domain-containing protein	-
CVCAS_RS05040 (CVCAS_0979)	-	1022744..1022977 (+)	234	WP_003131906.1	helix-turn-helix transcriptional regulator	-
CVCAS_RS05045 (CVCAS_0980)	-	1022991..1023716 (+)	726	WP_003131909.1	phage antirepressor Ant	-
CVCAS_RS05050 (CVCAS_0981)	-	1023729..1024064 (+)	336	WP_003131910.1	DUF771 domain-containing protein	-
CVCAS_RS05055 (CVCAS_0982)	-	1024205..1024399 (+)	195	WP_003131911.1	hypothetical protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 25801.67 Da
• Isoelectric Point: 7.9247

>NTDB_id=38455 CVCAS_RS05015 WP_003131898.1 1018939..1019619(+) (radC) [Lactococcus lactis subsp. lactis CV56]
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLKPSQADKIFTTKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide

• Length: 681 bp

>NTDB_id=38455 CVCAS_RS05015 WP_003131898.1 1018939..1019619(+) (radC) [Lactococcus lactis subsp. lactis CV56]
ATGTATGAACTAAAAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTAAAACCAAGTCAAGCTGA
TAAAATATTTACTACCAAAATAAAAAAATCTTGCGAGGATGTGGGGATCAATTTTATTGATCATATTATTGTAGGGGCTG
GTAATTATTTTAGCTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (5-80)

• RadC-like JAB domain (RadC) (115-223)

3D structure

• AlphaFold DB: Q9CGT5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Streptococcus pneumoniae TIGR4	45.946	98.23	0.451
radC	Streptococcus pneumoniae R6	45.946	98.23	0.451
radC	Streptococcus pneumoniae D39	45.946	98.23	0.451
radC	Streptococcus gordonii str. Challis substr. CH1	45.045	98.23	0.442
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	40.541	98.23	0.398