Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG571_RS00515 Genome accession   NZ_CP051496
Coordinates   105713..106180 (-) Length   155 a.a.
NCBI ID   WP_202140797.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-008     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 100713..111180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG571_RS00500 (HG571_00500) - 101141..101923 (-) 783 WP_202140794.1 glycosyltransferase family 2 protein -
  HG571_RS00505 (HG571_00505) tlpB 101954..103651 (-) 1698 WP_202140795.1 methyl-accepting chemotaxis protein TlpB -
  HG571_RS00510 (HG571_00510) - 103837..105582 (-) 1746 WP_202140796.1 5'-nucleotidase C-terminal domain-containing protein -
  HG571_RS00515 (HG571_00515) luxS 105713..106180 (-) 468 WP_202140797.1 S-ribosylhomocysteine lyase Regulator
  HG571_RS00520 (HG571_00520) - 106215..107357 (-) 1143 WP_202140798.1 cystathionine gamma-synthase -
  HG571_RS00525 (HG571_00525) - 107378..108295 (-) 918 WP_202140799.1 cysteine synthase family protein -
  HG571_RS00530 (HG571_00530) - 108463..108948 (-) 486 WP_237392997.1 NYN domain-containing protein -
  HG571_RS07900 - 108986..109144 (-) 159 WP_237392998.1 hypothetical protein -
  HG571_RS00535 (HG571_00535) dnaK 109286..111148 (-) 1863 WP_202140800.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17726.23 Da        Isoelectric Point: 6.8403

>NTDB_id=384531 HG571_RS00515 WP_202140797.1 105713..106180(-) (luxS) [Helicobacter pylori strain PUNO-008]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYIIDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARSFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=384531 HG571_RS00515 WP_202140797.1 105713..106180(-) (luxS) [Helicobacter pylori strain PUNO-008]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATATTATAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGTGGTTGGGCGGCTAACCACACCTTAG
AGGGCGCACAGAATTTAGCGCGCTCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.667

92.903

0.387