Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG573_RS05925 Genome accession   NZ_CP051494
Coordinates   1282688..1283737 (+) Length   349 a.a.
NCBI ID   WP_202147123.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-010     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1277688..1288737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG573_RS05910 (HG573_05915) - 1278654..1279838 (-) 1185 WP_202147120.1 DUF874 family protein -
  HG573_RS05915 (HG573_05920) asd 1280271..1281311 (-) 1041 WP_202147121.1 aspartate-semialdehyde dehydrogenase -
  HG573_RS05920 (HG573_05925) hisS 1281298..1282626 (-) 1329 WP_202147122.1 histidine--tRNA ligase -
  HG573_RS05925 (HG573_05930) waaF 1282688..1283737 (+) 1050 WP_202147123.1 lipopolysaccharide heptosyltransferase II Regulator
  HG573_RS05930 (HG573_05935) - 1283921..1284301 (-) 381 WP_000744161.1 hypothetical protein -
  HG573_RS05935 (HG573_05940) - 1284519..1285508 (+) 990 WP_045004512.1 aldo/keto reductase -
  HG573_RS05940 (HG573_05945) fusA 1285950..1288028 (-) 2079 WP_202147124.1 elongation factor G -
  HG573_RS05945 (HG573_05950) rpsG 1288040..1288507 (-) 468 WP_050853836.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39397.31 Da        Isoelectric Point: 9.9143

>NTDB_id=384473 HG573_RS05925 WP_202147123.1 1282688..1283737(+) (waaF) [Helicobacter pylori strain PUNO-010]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQLFRSLFLSHAVISAPKDYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEKGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIGELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=384473 HG573_RS05925 WP_202147123.1 1282688..1283737(+) (waaF) [Helicobacter pylori strain PUNO-010]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTGTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATTTCTGCCCCTAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCTTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGGAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCATTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTGTTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.647

97.421

0.367