Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG573_RS00530 Genome accession   NZ_CP051494
Coordinates   109359..109817 (-) Length   152 a.a.
NCBI ID   WP_162969457.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-010     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 104359..114817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG573_RS00515 (HG573_00515) - 104746..105528 (-) 783 WP_202147389.1 glycosyltransferase family 2 protein -
  HG573_RS00520 (HG573_00520) tlpB 105561..107258 (-) 1698 WP_202147390.1 methyl-accepting chemotaxis protein TlpB -
  HG573_RS00525 (HG573_00525) - 107472..109217 (-) 1746 WP_202147391.1 5'-nucleotidase C-terminal domain-containing protein -
  HG573_RS00530 (HG573_00530) luxS 109359..109817 (-) 459 WP_162969457.1 S-ribosylhomocysteine lyase Regulator
  HG573_RS00535 (HG573_00535) - 109855..110997 (-) 1143 WP_202147392.1 cystathionine gamma-synthase -
  HG573_RS00540 (HG573_00540) - 111018..111935 (-) 918 WP_202147393.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG573_RS07940 - 112051..112636 (+) 586 Protein_101 hypothetical protein -
  HG573_RS00550 (HG573_00550) dnaK 112870..114732 (-) 1863 WP_202147394.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17299.63 Da        Isoelectric Point: 6.3767

>NTDB_id=384445 HG573_RS00530 WP_162969457.1 109359..109817(-) (luxS) [Helicobacter pylori strain PUNO-010]
MKMNVESFNLDHTKVKAPYVRIADRKKGANGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=384445 HG573_RS00530 WP_162969457.1 109359..109817(-) (luxS) [Helicobacter pylori strain PUNO-010]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGATCGCAAAAA
GGGCGCTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACATGCCAAGCC
TGCACTCTTTAGAGCATTTAGTCGCTGAAATCATCCGTAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGGTTTTATCTCACGGTGTTAAACCATGATAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
CGTGTTAAAGGCTACAGAAGTGCCCGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCGC
AGAATTTAGCGCGTGCTTTTTTGGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

92.763

0.375