Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG579_RS06145 Genome accession   NZ_CP051493
Coordinates   1329838..1330887 (+) Length   349 a.a.
NCBI ID   WP_202133680.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-006     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1324838..1335887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG579_RS06130 (HG579_06125) - 1325887..1327008 (-) 1122 WP_202133677.1 DUF874 family protein -
  HG579_RS06135 (HG579_06130) asd 1327421..1328461 (-) 1041 WP_202133678.1 aspartate-semialdehyde dehydrogenase -
  HG579_RS06140 (HG579_06135) hisS 1328448..1329776 (-) 1329 WP_202133679.1 histidine--tRNA ligase -
  HG579_RS06145 (HG579_06140) waaF 1329838..1330887 (+) 1050 WP_202133680.1 lipopolysaccharide heptosyltransferase II Regulator
  HG579_RS06150 (HG579_06145) - 1331069..1331398 (-) 330 WP_187955599.1 flagellar protein -
  HG579_RS06155 (HG579_06150) - 1331637..1332626 (+) 990 WP_202133681.1 aldo/keto reductase -
  HG579_RS06160 (HG579_06155) fusA 1333138..1335216 (-) 2079 WP_025277095.1 elongation factor G -
  HG579_RS06165 (HG579_06160) rpsG 1335228..1335695 (-) 468 WP_001254355.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39563.27 Da        Isoelectric Point: 9.4387

>NTDB_id=384430 HG579_RS06145 WP_202133680.1 1329838..1330887(+) (waaF) [Helicobacter pylori strain LIM-006]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFVLVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPIHTPNTPKKIGFNPSASYGSAKRWPASYYAEVTVALLEKGHEIYFFGAKEDAIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLNCSPCKKRVCP
LKNEKNHLCMRSITPLEVLEAAHILLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=384430 HG579_RS06145 WP_202133680.1 1329838..1330887(+) (waaF) [Helicobacter pylori strain LIM-006]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTGTCTTAGTAGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATTGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAATCTCCCCATTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTACGGTTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAACTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAAAATGAAAAAAACCATTTGTGCATGCGATCTATCACTCCCCTTGAAGTCTTAGAAGCCGCTCACATTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.572

99.14

0.372