Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FZ025_RS21335 Genome accession   NZ_CP043476
Coordinates   4868423..4869808 (-) Length   461 a.a.
NCBI ID   WP_046979741.1    Uniprot ID   A0A2S7EZ28
Organism   Xanthomonas hyacinthi strain CFBP 1156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4863423..4874808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZ025_RS21310 (FZ025_21475) ubiM 4865049..4866239 (-) 1191 WP_046981941.1 5-demethoxyubiquinol-8 5-hydroxylase UbiM -
  FZ025_RS21315 (FZ025_21480) - 4866395..4866784 (-) 390 WP_046981942.1 MAPEG family protein -
  FZ025_RS21320 (FZ025_21485) - 4866834..4867385 (-) 552 WP_104558299.1 DUF4019 domain-containing protein -
  FZ025_RS22620 - 4867481..4867866 (-) 386 Protein_4229 hypothetical protein -
  FZ025_RS21330 (FZ025_21490) - 4867953..4868339 (-) 387 WP_046979740.1 DUF805 domain-containing protein -
  FZ025_RS21335 (FZ025_21495) radA 4868423..4869808 (-) 1386 WP_046979741.1 DNA repair protein RadA Machinery gene
  FZ025_RS21340 (FZ025_21500) - 4869900..4871768 (-) 1869 WP_158185624.1 tetratricopeptide repeat protein -
  FZ025_RS21345 (FZ025_21505) cyoD 4871976..4872314 (-) 339 WP_046979743.1 cytochrome o ubiquinol oxidase subunit IV -
  FZ025_RS21350 (FZ025_21510) cyoC 4872314..4872940 (-) 627 WP_046979744.1 cytochrome o ubiquinol oxidase subunit III -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48314.54 Da        Isoelectric Point: 7.7319

>NTDB_id=384426 FZ025_RS21335 WP_046979741.1 4868423..4869808(-) (radA) [Xanthomonas hyacinthi strain CFBP 1156]
MAKAKTAYVCGDCGAEYSKWQGQCAECGAWNSLSEIVLESASAAKAPAAARRSGWAGKTEAPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLAQVAGRAVRLDLPLDGLNALAETGI
EQILQHASAARPKLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGSSANQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGVVKGMEVIAVERLAQALEAASA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=384426 FZ025_RS21335 WP_046979741.1 4868423..4869808(-) (radA) [Xanthomonas hyacinthi strain CFBP 1156]
ATGGCCAAGGCCAAGACTGCCTATGTCTGCGGCGACTGTGGCGCCGAATACAGCAAGTGGCAGGGCCAGTGCGCCGAGTG
CGGGGCGTGGAATTCGCTGAGCGAGATCGTGCTGGAAAGCGCGTCGGCGGCGAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGACCGAGGCGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTCGGCGGTGGCCTGGTCGAAGGCGCGGTGGTGCTGATCGGCGGCGACCCGGGCAT
CGGCAAGTCGACGCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGCCCAGGTCGCCGGCCGCGCGGTGCGCCTGGATCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAGCAGATCCTGCAGCACGCCAGTGCGGCGCGGCCCAAGCTGATCGTGGCCGATTCGGTGCAGACCCTGTGGACCGAGTC
GCTGACCGCCGCGCCAGGTTCGGTCAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTACGCCAAGGAGACCGGCA
CCGCGGTGTTCCTGGTCGGCCATGTCACCAAGGAAGGCGGCATCGCCGGGCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTATTTCGAGGGCGAGAGCGGCAGCCGCTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
GCTGGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAGGTCTCCAACCCGTCGGCGATCTTCCTGTCCGGTAGCAGCG
CCAACCAGCCCGGCAGTTGCGTGATGGTGACGCGCGAAGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCGCTGGTCGAT
GCCTCGCCGCTGTCCAATCCGCGGCGGGTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCA
CCGCCACGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGATCTGCCGGTGCTGCTGGCGGTGCTGTCCTCGCTGCGCGACCGGCCGCTGGCGGAGAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGGGAGATCCGCCCGGTGCCCAACGGCGAGGACCGGTTGCGCGAAGCGGCCACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGCGTGGTCAAGGGCATGGAAGTGATCGCAGTGGAGCGCCTGGCGC
AGGCGCTGGAGGCGGCGAGCGCGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

AAA domain (AAA_25)

(88-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S7EZ28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.486
  radA Streptococcus mitis SK321

43.844

100

0.44
  radA Streptococcus pneumoniae D39

43.384

100

0.434
  radA Streptococcus pneumoniae TIGR4

43.384

100

0.434
  radA Streptococcus mitis NCTC 12261

43.384

100

0.434
  radA Streptococcus pneumoniae R6

43.384

100

0.434
  radA Streptococcus pneumoniae Rx1

43.384

100

0.434

Multiple sequence alignment