Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HG579_RS04065 | Genome accession | NZ_CP051493 |
| Coordinates | 868087..868353 (+) | Length | 88 a.a. |
| NCBI ID | WP_097697990.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain LIM-006 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 863087..873353
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG579_RS04030 (HG579_04020) | fliL | 863255..863806 (-) | 552 | WP_000797017.1 | flagellar basal body-associated protein FliL | - |
| HG579_RS04035 (HG579_04025) | rsmD | 863815..864417 (-) | 603 | WP_202134370.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| HG579_RS04040 (HG579_04030) | - | 864396..864731 (-) | 336 | WP_202134371.1 | dihydroneopterin aldolase | - |
| HG579_RS04045 (HG579_04035) | - | 865165..865944 (+) | 780 | WP_121034023.1 | hypothetical protein | - |
| HG579_RS04050 (HG579_04040) | - | 865964..866257 (+) | 294 | WP_079327348.1 | hypothetical protein | - |
| HG579_RS04055 (HG579_04045) | - | 866264..867787 (+) | 1524 | WP_202134372.1 | hypothetical protein | - |
| HG579_RS04060 (HG579_04050) | - | 867784..868086 (+) | 303 | WP_120914331.1 | virB2 type IV secretion protein | - |
| HG579_RS04065 (HG579_04055) | comB3 | 868087..868353 (+) | 267 | WP_097697990.1 | virB3 type IV secretion protein | Machinery gene |
| HG579_RS04070 (HG579_04060) | comB4 | 868400..870769 (+) | 2370 | WP_237392863.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HG579_RS04075 (HG579_04065) | - | 870772..872805 (+) | 2034 | WP_202134374.1 | type IA DNA topoisomerase | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 10150.92 Da Isoelectric Point: 4.8782
>NTDB_id=384419 HG579_RS04065 WP_097697990.1 868087..868353(+) (comB3) [Helicobacter pylori strain LIM-006]
MALHIVCVESTNIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA
MALHIVCVESTNIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA
Nucleotide
Download Length: 267 bp
>NTDB_id=384419 HG579_RS04065 WP_097697990.1 868087..868353(+) (comB3) [Helicobacter pylori strain LIM-006]
ATGGCATTGCATATTGTTTGTGTTGAAAGTACCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACCTTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA
ATGGCATTGCATATTGTTTGTGTTGAAAGTACCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACCTTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
40 |
100 |
0.409 |