Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HGO96_RS00690 Genome accession   NZ_CP051484
Coordinates   131850..132932 (+) Length   360 a.a.
NCBI ID   WP_054189265.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA71     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126850..137932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGO96_RS00670 (HGO96_03930) - 127220..128290 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  HGO96_RS00675 (HGO96_03935) - 128608..129663 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  HGO96_RS00680 (HGO96_03940) - 129835..130476 (-) 642 WP_054189263.1 YigZ family protein -
  HGO96_RS00685 (HGO96_03945) fakB1 130620..131486 (+) 867 WP_054189264.1 fatty acid kinase binding subunit FakB1 -
  HGO96_RS00690 (HGO96_03950) comFA 131850..132932 (+) 1083 WP_054189265.1 DEAD/DEAH box helicase Machinery gene
  HGO96_RS00695 (HGO96_03955) - 132925..133599 (+) 675 WP_054189266.1 ComF family protein -
  HGO96_RS00700 (HGO96_03960) raiA 133660..134232 (+) 573 WP_054189267.1 ribosome-associated translation inhibitor RaiA -
  HGO96_RS00705 (HGO96_03965) secA 134647..137178 (+) 2532 WP_054189268.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42047.54 Da        Isoelectric Point: 9.6803

>NTDB_id=384306 HGO96_RS00690 WP_054189265.1 131850..132932(+) (comFA) [Staphylococcus aureus strain NGA71]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQAYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQQMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDIFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQISGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=384306 HGO96_RS00690 WP_054189265.1 131850..132932(+) (comFA) [Staphylococcus aureus strain NGA71]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGGCTTATGCCTCTGAGCATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCG
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGTACAGTGCATCAACTTTACCGCTTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCAAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGC
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATATTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTTCTGGACGCGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAAATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(214-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364

Multiple sequence alignment