Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   HGO96_RS00535 Genome accession   NZ_CP051484
Coordinates   98827..100608 (+) Length   593 a.a.
NCBI ID   WP_077446562.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA71     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 93827..105608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGO96_RS00525 (HGO96_03790) ltaS 94721..96661 (+) 1941 WP_054189246.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  HGO96_RS00530 (HGO96_03795) - 96932..98815 (+) 1884 WP_077446561.1 ABC-F family ATP-binding cassette domain-containing protein -
  HGO96_RS00535 (HGO96_03800) recQ 98827..100608 (+) 1782 WP_077446562.1 DNA helicase RecQ Machinery gene
  HGO96_RS00540 (HGO96_03805) - 100828..101805 (+) 978 WP_054189249.1 ABC transporter ATP-binding protein -
  HGO96_RS00545 (HGO96_03810) - 101798..103312 (+) 1515 WP_054189250.1 ABC transporter permease/substrate-binding protein -
  HGO96_RS00550 (HGO96_03815) hisC 103552..104610 (+) 1059 WP_054189251.1 histidinol-phosphate transaminase -
  HGO96_RS00555 (HGO96_03820) - 104768..105310 (+) 543 WP_000197261.1 5'-3'-deoxyribonucleotidase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68172.04 Da        Isoelectric Point: 6.6848

>NTDB_id=384304 HGO96_RS00535 WP_077446562.1 98827..100608(+) (recQ) [Staphylococcus aureus strain NGA71]
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLDGTTIVISPLISLMKDQVDQLKAMGIQ
AAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFT
LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFVLDYIKTHDEDAGIIYCSTRKQVE
ELQEALESQKIDSVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRD
GLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDK
SYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEI
LMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRALFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPAS
KQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=384304 HGO96_RS00535 WP_077446562.1 98827..100608(+) (recQ) [Staphylococcus aureus strain NGA71]
ATGATGCAACAAACATTATCGCATTACTTTGGGTATGAAACGTTTCGACCAGGACAAGAAGAAATTATTAGTAAAGTATT
AGACCATCGTAATGTGCTTGGTGTCTTACCAACTGGTGGAGGTAAGTCTATATGCTATCAAGTACCAGGTTTATTGTTAG
ATGGTACAACAATTGTAATAAGTCCACTAATATCATTAATGAAAGATCAGGTGGATCAATTAAAAGCGATGGGAATTCAA
GCTGCTTTTTTAAATAGTAGTTTGACTCAAAAAGAGCAACAACGTATTGAAAAAGCATTATCAAATGGAGAAATTCAATT
TTTGTATGTTGCACCAGAACGATTTGAAAACCGATATTTTTTAAATATGCTTCAGCGTATAAAGATTCACTTAGTCGCGT
TTGATGAAGCGCATTGTATATCTAAATGGGGACATGATTTCAGACCGAGTTATCAAAACGTCATTTCTAAAGTATTTACG
TTACCTCAAGATTTTACAATAATAGCGTTGACAGCAACTGCCACGGTTGAAGTACAGCAAGATATTAGAGAAAAGTTGAA
TATCGCTCAAACTGATCAAATTAAAACGAGTACTAAGCGTAGAAACTTAATTTTTAAAGTAAATCCTACTTATCAACGTC
AAAAATTTGTATTGGATTATATTAAAACACACGATGAAGATGCAGGTATTATTTATTGTTCTACACGTAAGCAAGTTGAA
GAGCTTCAAGAAGCCTTAGAAAGCCAGAAAATTGATAGTGTGATATATCACGCAGGTTTGAGCAATAAAGAAAGAGAAGA
AGCGCAGAATGATTTCTTATTTGATCGTGTTAAAGTAGTCGTTGCTACGAACGCGTTTGGTATGGGTATTGATAAATCTA
ATGTACGTTTTGTTATTCATTATAATATGCCTGGAGATTTAGAATCTTATTATCAAGAAGCGGGACGTGCAGGTCGTGAC
GGATTGAAAAGTGAATGTATTCTTTTGTTTAGCGAACGCGATATCAATTTACACGAGTATTTTATTACTGTCTCACAAGC
TGATGATGACTATAAAGATAAAATGGGCGAAAAGTTAACTAAAATGATTCAATATACAAAAACAAAAAAATGTTTAGAAG
CAACAATTGTCCATTATTTTGAACCGAATGAAAAATTAGAAGAATGTGAACAATGTAGTAATTGTGTTCAACAAGATAAA
TCATATAATATGACACAAGAAGCTAAGATGATTATTAGTTGCATCGCTCGTATGAAACAACAAGAGAGTTATAGTGTTAT
CATTCAAGTGTTAAGAGGAGAGTCAACAGATTATATTAAGTATAAAGGTTATGACCAAATTTCAACCCATGGTTTAATGA
AAGGTTACACAACATCAGAATTAAGTCACTTAATAGATGAATTAAGATTCAAAGGGTTCTTAAATGAAAATGATGAAATA
TTAATGTGTGATACTTCAATTAAAAAATTACTCAGTAATGAAGTAGAAGTATTCACAACACCATTTAAGCAAAAGGCGAC
TGAAAAAGTATTTATAAATACGGTTGAAGGTGTTGATCGAGCTTTATTCAGTCAGTTGGTAGAAGTTCGTAAAAAATTAA
GTGACAAATTAACGATAGCACCTGTAAGTATATTTTCTGATTACACGTTGGAGGAATTTGCTAAACGTAAACCTGCTTCG
AAACAAGACATGATTAATATTGATGGCGTAGGTAGTTACAAATTAAAACATTATTGTCCGGCATTTTTAGAAACGATTCA
AAATTATAAAGCCAAAGTATAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(333-395)

HRDC domain (HRDC)

(520-586)

Helicase conserved C-terminal domain (Helicase_C)

(218-320)

RQC domain (RQC)

(400-500)

DEAD/DEAH box helicase (DEAD)

(17-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

42.373

99.494

0.422