Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CVCAS_RS00345 Genome accession   NC_017486
Coordinates   55115..55870 (+) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis subsp. lactis CV56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 50115..60870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVCAS_RS00315 (CVCAS_0047) - 50174..50623 (+) 450 WP_003132211.1 GNAT family N-acetyltransferase -
  CVCAS_RS00320 (CVCAS_0048) - 50700..50942 (+) 243 WP_003132213.1 TM2 domain-containing protein -
  CVCAS_RS00325 (CVCAS_0049) - 51023..52645 (-) 1623 WP_003132214.1 SulP family inorganic anion transporter -
  CVCAS_RS00330 (CVCAS_0050) - 52855..53376 (+) 522 WP_003132215.1 GNAT family N-acetyltransferase -
  CVCAS_RS00340 (CVCAS_0051) - 53841..55016 (+) 1176 WP_012896922.1 pyridoxal phosphate-dependent aminotransferase -
  CVCAS_RS00345 (CVCAS_0052) recO 55115..55870 (+) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  CVCAS_RS00350 (CVCAS_0053) - 55984..56865 (+) 882 WP_014570327.1 Rgg/GadR/MutR family transcriptional regulator -
  CVCAS_RS00355 (CVCAS_0054) - 57097..58347 (+) 1251 WP_003132219.1 radical SAM/SPASM domain-containing protein -
  CVCAS_RS00360 (CVCAS_0055) - 58353..59588 (+) 1236 WP_003132221.1 MFS transporter -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=38427 CVCAS_RS00345 WP_003132217.1 55115..55870(+) (recO) [Lactococcus lactis subsp. lactis CV56]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=38427 CVCAS_RS00345 WP_003132217.1 55115..55870(+) (recO) [Lactococcus lactis subsp. lactis CV56]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTATATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCCAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534

Multiple sequence alignment