Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R2846_RS08785 Genome accession   NC_017452
Coordinates   1801327..1801980 (-) Length   217 a.a.
NCBI ID   WP_014551147.1    Uniprot ID   -
Organism   Haemophilus influenzae R2846     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796327..1806980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2846_RS08785 (R2846_1732) sxy/tfoX 1801327..1801980 (-) 654 WP_014551147.1 DNA transformation protein TfoX Regulator
  R2846_RS08790 (R2846_1733) recA 1802353..1803417 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  R2846_RS08795 (R2846_1734) recX 1803496..1803954 (+) 459 WP_005688257.1 recombination regulator RecX -
  R2846_RS08800 (R2846_1735) crcB 1803951..1804337 (-) 387 WP_005654963.1 fluoride efflux transporter CrcB -
  R2846_RS08805 (R2846_1736) - 1804337..1805155 (-) 819 WP_014551148.1 Cof-type HAD-IIB family hydrolase -
  R2846_RS08810 (R2846_1737) - 1805558..1806562 (+) 1005 WP_014551149.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=38424 R2846_RS08785 WP_014551147.1 1801327..1801980(-) (sxy/tfoX) [Haemophilus influenzae R2846]
MNIKDEHIESVCSLLDRLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=38424 R2846_RS08785 WP_014551147.1 1801327..1801980(-) (sxy/tfoX) [Haemophilus influenzae R2846]
ATGAATATAAAGGATGAGCATATAGAGAGCGTTTGCTCTTTGTTAGATCGGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAGCGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(15-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.157

100

0.982

Multiple sequence alignment