Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DIU38_RS23880 Genome accession   NZ_CP043449
Coordinates   5622881..5624293 (-) Length   470 a.a.
NCBI ID   WP_091175671.1    Uniprot ID   A0AAE6MK37
Organism   Mucilaginibacter sp. P4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5617881..5629293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIU38_RS23855 (DIU38_023855) - 5618459..5619766 (-) 1308 WP_112657315.1 M28 family metallopeptidase -
  DIU38_RS23860 (DIU38_023860) - 5619769..5621643 (-) 1875 WP_112657313.1 M61 family metallopeptidase -
  DIU38_RS23865 (DIU38_023865) - 5621704..5622051 (-) 348 WP_112657311.1 DUF86 domain-containing protein -
  DIU38_RS23870 (DIU38_023870) - 5622041..5622334 (-) 294 WP_112657309.1 nucleotidyltransferase family protein -
  DIU38_RS23875 (DIU38_023875) - 5622466..5622747 (+) 282 WP_112657307.1 hypothetical protein -
  DIU38_RS23880 (DIU38_023880) radA 5622881..5624293 (-) 1413 WP_091175671.1 DNA repair protein RadA Machinery gene
  DIU38_RS23885 (DIU38_023885) - 5624375..5626666 (-) 2292 WP_112657305.1 hypothetical protein -
  DIU38_RS23890 (DIU38_023890) - 5626596..5627621 (-) 1026 WP_112657303.1 hypothetical protein -
  DIU38_RS23895 (DIU38_023895) - 5627722..5627910 (+) 189 WP_146750355.1 hypothetical protein -
  DIU38_RS23900 (DIU38_023900) - 5627889..5628101 (+) 213 WP_112657299.1 hypothetical protein -
  DIU38_RS23905 (DIU38_023905) - 5628160..5628645 (+) 486 WP_112657297.1 SMI1/KNR4 family protein -
  DIU38_RS23910 (DIU38_023910) - 5628805..5628972 (-) 168 WP_112657295.1 DUF3606 domain-containing protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51564.33 Da        Isoelectric Point: 6.2540

>NTDB_id=384120 DIU38_RS23880 WP_091175671.1 5622881..5624293(-) (radA) [Mucilaginibacter sp. P4]
MAKSKIAYFCQSCGFESPKWLGKCPSCQQWNTFVEEVIEKGNAAVPAWKPASTSQQRANKPVAVTEITYTEEHRVPTPDK
EFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALNMPNQKVLYVSGEESERQIKMRAERLASPEGGVIGEGAYILTETS
TQNIFKQIESLEPDMVVIDSIQTLHSAHIESTPGSVSQVRECTAELLRFAKETSTPVFLIGHITKDGMIAGPKILEHMVD
TVLQFEGDRHHVYRILRTIKNRFGSASELGIYEMMGEGLREVSNPSEILLSHREAPLSGITISATLEGMRPMLIETQALV
SASAYGTPQRTATGFDTKRMSMLLAVLEKRCGFRLGAKDVFLNITGGIRVEDPAIDLGLAAAIISSHEDMPIPFKTCFAG
ELGLSGEIRAVNRVEQRIAEAQKLGFNQIFISKYNLPASGQDKKRMDLSRYDIDIKIVSSIEEVFSLLFG

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=384120 DIU38_RS23880 WP_091175671.1 5622881..5624293(-) (radA) [Mucilaginibacter sp. P4]
ATGGCCAAATCCAAGATCGCGTACTTTTGTCAAAGCTGTGGCTTTGAATCCCCCAAGTGGCTGGGTAAATGCCCGTCATG
CCAGCAATGGAACACTTTTGTTGAGGAGGTGATTGAAAAAGGCAATGCAGCGGTACCTGCCTGGAAGCCTGCATCAACCA
GTCAGCAGCGGGCCAATAAACCTGTGGCCGTAACGGAGATCACTTATACCGAAGAGCACCGTGTGCCAACTCCCGATAAA
GAGTTTAACCGCGTTTTGGGAGGAGGGATAGTGCCCGGTTCACTGGTATTGATAGGCGGAGAGCCGGGCATAGGCAAATC
AACCCTGATGCTGCAGCTTGCGCTCAATATGCCAAACCAAAAAGTTTTGTATGTATCGGGCGAGGAAAGTGAAAGGCAGA
TAAAAATGCGGGCCGAAAGGTTAGCTTCGCCCGAAGGGGGAGTCATAGGCGAAGGGGCTTATATACTGACAGAAACTTCA
ACCCAAAACATATTTAAACAGATAGAATCATTAGAACCGGATATGGTGGTGATCGACTCGATCCAAACCCTGCATTCGGC
ACATATCGAATCAACTCCCGGCAGTGTATCGCAGGTTAGGGAATGTACCGCCGAATTGCTTCGCTTCGCCAAAGAGACTT
CGACGCCGGTATTTTTAATTGGTCATATTACCAAAGATGGGATGATTGCCGGTCCGAAGATATTGGAGCACATGGTTGAT
ACTGTGCTGCAGTTTGAGGGCGACAGGCACCACGTTTACCGCATATTGCGCACCATTAAGAACCGTTTCGGCTCGGCATC
CGAATTGGGTATTTACGAAATGATGGGGGAAGGATTACGGGAGGTGTCCAATCCGTCGGAGATCCTGCTTTCGCACCGGG
AAGCACCATTAAGCGGCATCACTATTTCGGCTACTTTGGAAGGGATGCGACCGATGCTGATTGAAACCCAGGCCTTGGTT
AGTGCGTCGGCCTATGGGACGCCACAACGTACTGCTACAGGCTTCGATACCAAACGTATGAGTATGTTGTTGGCTGTATT
GGAAAAACGCTGCGGTTTTAGGTTGGGTGCAAAGGATGTGTTCCTGAATATTACCGGCGGTATTAGGGTTGAGGACCCGG
CTATTGACCTTGGTTTGGCGGCGGCCATTATCTCATCGCACGAGGATATGCCCATCCCGTTCAAAACCTGTTTTGCAGGC
GAATTGGGACTTTCGGGCGAAATCAGGGCGGTGAACCGCGTGGAGCAACGCATTGCCGAAGCGCAGAAGCTTGGCTTTAA
CCAGATCTTTATCTCCAAATATAACCTCCCGGCCAGCGGCCAGGATAAAAAGCGCATGGATTTGTCCCGCTACGATATCG
ACATCAAAATTGTAAGTAGTATCGAAGAGGTTTTTAGCTTGTTGTTTGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-228)

Subunit ChlI of Mg-chelatase (ChlI)

(346-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.318

93.617

0.509
  radA Streptococcus pneumoniae Rx1

49.894

100

0.5
  radA Streptococcus pneumoniae D39

49.894

100

0.5
  radA Streptococcus pneumoniae R6

49.894

100

0.5
  radA Streptococcus pneumoniae TIGR4

49.894

100

0.5
  radA Streptococcus mitis NCTC 12261

49.894

100

0.5
  radA Streptococcus mitis SK321

52.055

93.191

0.485

Multiple sequence alignment