Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HF085_RS13080 Genome accession   NZ_CP051479
Coordinates   2653703..2654173 (-) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain NGA76     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2648703..2659173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF085_RS13050 (HF085_10920) - 2648743..2649156 (+) 414 WP_001123300.1 thiol-disulfide oxidoreductase DCC family protein -
  HF085_RS13055 (HF085_10915) - 2649356..2649799 (+) 444 WP_000070866.1 Dps family protein -
  HF085_RS13060 (HF085_10910) deoD 2649920..2650630 (-) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  HF085_RS13065 (HF085_10905) deoC 2650945..2651607 (+) 663 WP_001568284.1 deoxyribose-phosphate aldolase -
  HF085_RS13070 (HF085_10900) - 2651886..2653187 (+) 1302 WP_001242318.1 pyrimidine-nucleoside phosphorylase -
  HF085_RS13075 (HF085_10895) - 2653201..2653551 (+) 351 WP_001024035.1 membrane protein -
  HF085_RS13080 (HF085_10890) luxS 2653703..2654173 (-) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  HF085_RS13085 (HF085_10885) - 2654484..2655668 (+) 1185 WP_001291497.1 M20 family metallopeptidase -
  HF085_RS13090 (HF085_10880) - 2655668..2656861 (+) 1194 WP_103148533.1 ATP-grasp domain-containing protein -
  HF085_RS13095 (HF085_10875) - 2657260..2657931 (+) 672 WP_000120549.1 DUF2750 domain-containing protein -
  HF085_RS13100 (HF085_10870) coaW 2658061..2658864 (-) 804 WP_000862736.1 type II pantothenate kinase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=384118 HF085_RS13080 WP_000164421.1 2653703..2654173(-) (luxS) [Staphylococcus aureus strain NGA76]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=384118 HF085_RS13080 WP_000164421.1 2653703..2654173(-) (luxS) [Staphylococcus aureus strain NGA76]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAGGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404