Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FZF10_RS13485 Genome accession   NZ_CP043440
Coordinates   2497794..2499275 (+) Length   493 a.a.
NCBI ID   WP_149136775.1    Uniprot ID   -
Organism   Cupriavidus campinensis strain MJ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2492794..2504275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZF10_RS13465 - 2494485..2495468 (+) 984 WP_149136772.1 SIS domain-containing protein -
  FZF10_RS13470 lptC 2495481..2496116 (+) 636 WP_149136773.1 LPS export ABC transporter periplasmic protein LptC -
  FZF10_RS13475 lptA 2496180..2496821 (+) 642 WP_144198889.1 lipopolysaccharide transport periplasmic protein LptA -
  FZF10_RS13480 lptB 2496862..2497662 (+) 801 WP_149136774.1 LPS export ABC transporter ATP-binding protein -
  FZF10_RS13485 rpoN/rpoN1 2497794..2499275 (+) 1482 WP_149136775.1 RNA polymerase factor sigma-54 Machinery gene
  FZF10_RS13490 hpf 2499326..2499679 (+) 354 WP_092291692.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FZF10_RS13495 - 2500156..2500611 (+) 456 WP_092291690.1 PTS sugar transporter subunit IIA -
  FZF10_RS13500 hprK 2500668..2501638 (+) 971 Protein_2280 HPr(Ser) kinase/phosphatase -
  FZF10_RS31905 - 2501747..2502078 (+) 332 Protein_2281 PsiF family protein -
  FZF10_RS13510 rapZ 2502142..2503040 (+) 899 Protein_2282 RNase adapter RapZ -
  FZF10_RS13515 - 2503085..2503747 (+) 663 WP_149136778.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 54951.26 Da        Isoelectric Point: 5.1128

>NTDB_id=384105 FZF10_RS13485 WP_149136775.1 2497794..2499275(+) (rpoN/rpoN1) [Cupriavidus campinensis strain MJ1]
MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVSADGSVSLQSAPAPASSEPQ
PNGDARSEGASGGEDDNYNDNGSEDYGSDWSLDDFARRPQGDEDEKTPMQLRDAEPTLREHLMEQLAPLKISVRDKGLAI
FLVESLDDDGYLSASLEEICTELPEELEFEIDEVHAILTLLQSFDPPGVGARNAAECLSLQLRRLKHPHRDLALTIVNHH
LELLAVRDYTRLKKALQVDEIALKAAHELIRSLAPYPGHAFNRPEADFVVPDVFVRKSGSGWIAALNPDVMPRLRINDMY
AQILRGAKGESGTAGLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKNFFTHGEIAMRPLVLREIADTLGLHESTISR
VTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEDPRNPLSDSRIAELLGEQGFVVARRTVAKYRE
ALKIPAVNLRKTL

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=384105 FZF10_RS13485 WP_149136775.1 2497794..2499275(+) (rpoN/rpoN1) [Cupriavidus campinensis strain MJ1]
ATGAAACCGTCGCTTCAGCTTCGTCTCTCGCAACATCTGGCATTGACCCCGCAGCTGCAACAGTCGATCCGATTGTTGCA
GCTCTCGACGCTTGAACTCCAGCAGGAAGTGGAACAGGCGCTCACCGAAAACCCCCTGCTCGAACGCGAGAACGACTGGA
TCGAAAGCCCGCTGCGGGTGTCCGCCGATGGCTCGGTCAGCCTCCAGAGCGCCCCGGCGCCGGCTTCCTCCGAGCCGCAG
CCCAACGGCGACGCACGCAGCGAGGGTGCATCCGGCGGCGAGGACGACAACTACAACGACAACGGCAGCGAGGACTACGG
CAGCGACTGGAGCCTCGACGACTTTGCCCGCCGCCCCCAGGGCGACGAGGACGAGAAGACGCCGATGCAGCTGCGCGACG
CCGAGCCCACGCTGCGCGAGCACCTGATGGAGCAGCTGGCCCCGCTGAAGATCTCCGTGCGCGACAAGGGCCTTGCCATC
TTCCTGGTCGAGTCGCTCGACGATGACGGCTACCTGAGCGCCTCGCTCGAGGAAATCTGCACCGAACTGCCCGAGGAACT
CGAGTTCGAGATCGACGAAGTCCACGCGATCCTGACCCTGCTGCAGAGCTTCGACCCGCCCGGCGTGGGCGCGCGCAATG
CCGCCGAGTGCCTCAGCCTGCAATTGCGGCGCCTGAAGCACCCGCATCGCGACCTGGCGCTGACCATCGTCAACCATCAC
CTGGAATTGCTGGCCGTGCGCGACTACACACGGCTAAAGAAAGCGCTCCAGGTGGACGAAATAGCACTGAAGGCAGCACA
CGAACTGATTCGCTCGCTGGCGCCGTATCCGGGGCATGCGTTCAACCGTCCCGAAGCCGACTTCGTGGTGCCCGACGTGT
TCGTGCGCAAGAGCGGCAGCGGATGGATCGCGGCGCTCAATCCGGACGTCATGCCACGGCTGCGCATCAACGACATGTAT
GCGCAGATCCTGCGCGGCGCGAAGGGTGAGTCGGGGACGGCGGGCCTGCAGCAGAAGCTTCAGGAGGCGCGGTGGCTTAT
CAAGAACATCCAGCAACGATTCGACACGATCCTGCGTGTTTCTCAGGCAATTGTCGAACGTCAAAAGAACTTTTTCACGC
ATGGCGAAATCGCGATGCGCCCCTTGGTTTTGCGGGAAATAGCCGATACACTCGGTTTACATGAGTCGACCATTTCCCGG
GTCACCACGAATAAGTACATGGCCACGCCCATGGGTACTTTCGAGTTGAAGTACTTCTTTGGGAGCCACGTCTCCACGGA
GACTGGCGGCGCGGCCTCCTCCACGGCAATCCGCGCGCTGATCAAGCAACTGATAGGAGCCGAAGACCCCAGGAATCCCC
TTTCCGACAGCCGGATCGCCGAACTGCTGGGCGAGCAAGGCTTCGTGGTCGCACGCCGCACGGTGGCCAAATACCGCGAA
GCGCTCAAGATCCCCGCAGTGAATCTCCGCAAGACTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(336-491)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(130-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

79

100

0.801

Multiple sequence alignment