Detailed information NTG0384097

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FZF10_RS06335
• Genome accession: NZ_CP043440
• Coordinates: 928685..930052 (+)
• Length: 455 a.a.
• NCBI ID: WP_144200592.1
• Uniprot ID: -
• Organism: Cupriavidus campinensis strain MJ1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 923685..935052

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FZF10_RS06325	lplT	925710..927029 (-)	1320	WP_149135806.1	lysophospholipid transporter LplT	-
FZF10_RS06330	alr	927515..928624 (+)	1110	WP_149135807.1	alanine racemase	-
FZF10_RS06335	radA	928685..930052 (+)	1368	WP_144200592.1	DNA repair protein RadA	Machinery gene
FZF10_RS06340	-	930069..930848 (+)	780	WP_149135808.1	GntR family transcriptional regulator	-
FZF10_RS06345	-	931084..932652 (+)	1569	WP_149137502.1	gamma-glutamyltransferase family protein	-
FZF10_RS06350	oxlT	932765..934060 (+)	1296	WP_392388487.1	oxalate/formate MFS antiporter	-
FZF10_RS06355	-	934180..934665 (+)	486	WP_149135809.1	disulfide bond formation protein B	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 48420.65 Da
• Isoelectric Point: 6.9498

>NTDB_id=384097 FZF10_RS06335 WP_144200592.1 928685..930052(+) (radA) [Cupriavidus campinensis strain MJ1]
MAKTKTVYSCTECGGTTPRWAGQCPQCNAWNTLVESVADSGSSAARRFQPLANSAVVRKLSEIDAADVPRFTTGIDEFDR
VLGGGLVSGGVVLIGGDPGIGKSTLLLQTLANLAGQRRVLYVSGEESGAQIALRAQRLGVDAPALGLLPEIQLEKIQATL
EAEQPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSTGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGD
THSSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEESVAGSCVLVTQEGTRPLLVEVQALVDTANVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEI
RPSPRGQERLKEAAKLGFTMAVIPKANAPKQKIEGIEVIAVDRLEQAIDRVRHLD

Nucleotide

• Length: 1368 bp

>NTDB_id=384097 FZF10_RS06335 WP_144200592.1 928685..930052(+) (radA) [Cupriavidus campinensis strain MJ1]
TTGGCCAAGACCAAGACTGTCTATTCCTGCACCGAGTGCGGCGGTACCACGCCGCGCTGGGCCGGCCAGTGCCCGCAGTG
CAACGCCTGGAACACGCTCGTGGAATCCGTGGCGGATTCCGGTTCCAGCGCCGCGCGGCGCTTCCAGCCGCTGGCCAACT
CGGCCGTGGTGCGCAAGCTGTCCGAGATCGATGCGGCCGATGTGCCGCGCTTCACCACCGGCATCGACGAGTTCGACCGC
GTGCTCGGCGGCGGGCTGGTCTCGGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCTGCT
CCAGACGCTGGCCAACCTGGCCGGCCAGCGCCGCGTGCTCTATGTCAGCGGCGAGGAGTCCGGCGCCCAGATCGCACTGC
GTGCCCAGCGGCTGGGCGTGGATGCCCCGGCGCTGGGCCTGCTGCCCGAGATCCAGCTGGAGAAGATCCAGGCCACGCTG
GAGGCCGAACAGCCCGAAGTGGCCGTGATCGACTCGATCCAGACCCTGTATTCGGAGGCGCTGACCTCGGCGCCTGGCTC
GGTGGCGCAGGTGCGCGAGTGCGCGGCGCAGCTGACGCGCATCGCCAAGAGCACCGGCATCACCATCATCCTGGTCGGCC
ATGTGACCAAGGAAGGCAGCCTGGCCGGGCCGCGCGTGCTCGAACACATCGTCGATACGGTGCTGTATTTCGAAGGGGAT
ACCCATTCGTCGCACCGGCTGATCCGCGCGTTCAAGAACCGCTTCGGGGCGGTGAACGAACTCGGCGTTTTCGCGATGAC
CGAGCGCGGCTTGCGCGGCATCAGCAACCCGTCGGCGCTGTTCCTCTCGCAGCACGAGGAATCGGTGGCGGGTTCGTGCG
TGCTGGTTACGCAGGAGGGCACCCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTCGATACCGCCAACGTGCCCAATCCG
CGCCGGCTGGCGGTGGGGCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGCGGGCATTGCGTG
CTTCGACCAGGACGTGTTCCTGAACGCCGTGGGTGGGGTCAAGATCACCGAACCGGCCGCCGATCTGGCGGTGCTGCTGT
CGATCCATTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTGTTTGGCGAAGTGGGGCTGGCGGGCGAGATC
CGCCCGAGCCCGCGCGGGCAGGAGCGGCTCAAGGAGGCCGCCAAGCTCGGCTTCACGATGGCGGTGATCCCCAAGGCAAA
CGCGCCGAAGCAGAAGATCGAGGGCATCGAGGTGATCGCCGTGGACCGCCTCGAACAAGCCATCGACCGCGTGCGGCACC
TGGACTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (66-219)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.993	99.56	0.508
radA	Streptococcus pneumoniae Rx1	46.537	100	0.473
radA	Streptococcus pneumoniae D39	46.537	100	0.473
radA	Streptococcus pneumoniae TIGR4	46.537	100	0.473
radA	Streptococcus pneumoniae R6	46.537	100	0.473
radA	Streptococcus mitis SK321	46.421	100	0.47
radA	Streptococcus mitis NCTC 12261	46.32	100	0.47