Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FZF21_RS07845 Genome accession   NZ_CP043438
Coordinates   1655110..1655736 (+) Length   208 a.a.
NCBI ID   WP_047736820.1    Uniprot ID   -
Organism   Enterobacter sp. LU1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650110..1660736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZF21_RS07825 (FZF21_02130) - 1650509..1652269 (-) 1761 WP_047736822.1 Lon protease family protein -
  FZF21_RS07830 (FZF21_02125) matP 1652456..1652908 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  FZF21_RS07835 (FZF21_02120) ompA 1652974..1654026 (-) 1053 WP_017694761.1 porin OmpA -
  FZF21_RS07840 (FZF21_02115) sulA 1654383..1654892 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  FZF21_RS07845 (FZF21_02110) sxy/tfoX 1655110..1655736 (+) 627 WP_047736820.1 TfoX/Sxy family DNA transformation protein Regulator
  FZF21_RS07850 (FZF21_02105) yccS 1655693..1657855 (-) 2163 WP_015570895.1 YccS family putative transporter -
  FZF21_RS07855 (FZF21_02100) - 1657874..1658320 (-) 447 WP_149120986.1 YccF domain-containing protein -
  FZF21_RS07860 (FZF21_02095) helD 1658443..1660497 (+) 2055 WP_045338026.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23993.63 Da        Isoelectric Point: 9.2159

>NTDB_id=384079 FZF21_RS07845 WP_047736820.1 1655110..1655736(+) (sxy/tfoX) [Enterobacter sp. LU1]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAM

Nucleotide


Download         Length: 627 bp        

>NTDB_id=384079 FZF21_RS07845 WP_047736820.1 1655110..1655736(+) (sxy/tfoX) [Enterobacter sp. LU1]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCTCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCATGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment