Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FY536_RS04870 Genome accession   NZ_CP043431
Coordinates   1007374..1008744 (+) Length   456 a.a.
NCBI ID   WP_006844965.1    Uniprot ID   A0A7H1MME2
Organism   Weissella koreensis strain SK     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1002374..1013744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY536_RS04840 (FY536_04825) - 1002551..1002748 (+) 198 WP_013989623.1 hypothetical protein -
  FY536_RS04845 (FY536_04830) - 1002859..1003479 (+) 621 WP_006844960.1 sugar O-acetyltransferase -
  FY536_RS04850 (FY536_04835) rpmF 1003667..1003840 (+) 174 WP_006844961.1 50S ribosomal protein L32 -
  FY536_RS04855 (FY536_04840) - 1004143..1006209 (+) 2067 WP_006844962.1 ATP-dependent Clp protease ATP-binding subunit -
  FY536_RS04860 (FY536_04845) - 1006371..1006667 (+) 297 WP_006844963.1 GNAT family N-acetyltransferase -
  FY536_RS04865 (FY536_04850) - 1006831..1007370 (+) 540 WP_006844964.1 dUTP diphosphatase -
  FY536_RS04870 (FY536_04855) radA 1007374..1008744 (+) 1371 WP_006844965.1 DNA repair protein RadA Machinery gene
  FY536_RS04875 (FY536_04860) - 1008776..1009888 (+) 1113 WP_190275612.1 PIN/TRAM domain-containing protein -
  FY536_RS04880 (FY536_04865) gltX 1009975..1011471 (+) 1497 WP_006844967.1 glutamate--tRNA ligase -
  FY536_RS04885 (FY536_04870) pheS 1011805..1012848 (+) 1044 WP_006844968.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49925.32 Da        Isoelectric Point: 5.4156

>NTDB_id=384036 FY536_RS04870 WP_006844965.1 1007374..1008744(+) (radA) [Weissella koreensis strain SK]
MAKVKTHFVCSNCGDISQRYLGRCSNCGAWGTLVEEEIPSDKVDRKNRVNLAGQVAKVERLNQVELEEVPRVKTKIEEFN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAGEGVVLYVSGEESAAQIKLRAERLGVEDDHNFLIYPETDMTHIRK
AIDDYGPEYVIIDSIQTMQQPDVNSAVGSVAQIRETTAELLQIAKTNGITIFVVGHVTKDGAIAGPKILEHMVDTVLYFE
GDNQRSYRLLRAVKNRFGSTNELGVFEMQQEGLTEVLNPSEMFLEERMEATTGSAVVVALEGSRPILVEVQALVTPTVFG
NAQRTSSGIDRNRVSLIMAVLEKRTNILLQNQDAYVRAAGGVKLNEPAVDLALAVAIASSYREAETRLTDAFVGEIGLTG
EIRRVPHIEERITEAQKLGFKRIFIPKNSLKKMLKIEGIKVITVQTLREALDLALS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=384036 FY536_RS04870 WP_006844965.1 1007374..1008744(+) (radA) [Weissella koreensis strain SK]
ATGGCAAAAGTAAAGACCCATTTTGTTTGTTCTAACTGTGGTGATATTTCACAACGTTACTTGGGTCGTTGCAGTAACTG
TGGTGCTTGGGGAACTTTAGTAGAAGAAGAAATTCCAAGCGATAAAGTTGATCGTAAAAATCGAGTTAACTTAGCTGGAC
AAGTGGCGAAAGTAGAACGATTAAATCAGGTTGAATTAGAAGAGGTTCCTCGCGTTAAAACTAAAATTGAAGAATTTAAT
CGAGTTTTAGGTGGAGGGGTTGTTCCCGGCTCGATGGTCTTAATTGGTGGTGACCCAGGAATCGGTAAATCAACGTTATT
GTTGCAAGTTTCAGGCCAATTAGCTGGCGAAGGGGTTGTATTATACGTTTCTGGCGAAGAGAGTGCGGCTCAAATTAAGT
TACGGGCGGAACGTTTGGGCGTAGAAGATGATCATAATTTTTTGATTTATCCAGAAACTGATATGACACATATTCGGAAG
GCTATTGATGATTACGGACCTGAATATGTCATTATCGATTCTATTCAGACGATGCAACAACCAGATGTCAATTCGGCAGT
TGGATCAGTTGCACAAATTCGTGAGACGACAGCTGAATTATTGCAGATCGCTAAAACCAATGGGATTACGATTTTCGTCG
TTGGTCATGTTACCAAAGATGGTGCTATTGCTGGACCGAAAATATTAGAACACATGGTTGATACAGTGCTTTATTTTGAA
GGTGACAATCAACGTAGCTATCGATTATTACGGGCTGTCAAAAATCGATTTGGTTCAACTAATGAACTCGGAGTTTTTGA
AATGCAGCAGGAAGGCTTGACGGAGGTTTTGAACCCTTCTGAAATGTTTTTGGAAGAACGGATGGAAGCTACCACTGGTT
CAGCAGTAGTTGTGGCCTTAGAGGGTTCACGACCTATTTTGGTAGAAGTGCAGGCTTTAGTGACGCCAACTGTGTTTGGA
AACGCTCAACGAACCAGTTCGGGAATTGATCGTAATCGGGTGTCACTGATTATGGCGGTATTGGAAAAAAGAACCAACAT
ATTATTACAAAATCAGGATGCCTATGTTCGAGCTGCCGGTGGGGTTAAACTCAATGAACCTGCAGTTGATTTAGCTTTGG
CAGTAGCAATTGCATCCAGTTATCGTGAGGCAGAGACTCGGCTAACTGACGCCTTTGTGGGCGAAATTGGTTTAACTGGT
GAGATTAGGCGAGTACCACATATTGAAGAACGGATCACGGAAGCACAAAAATTAGGGTTTAAGCGGATTTTCATTCCGAA
AAATAGTTTAAAGAAAATGCTGAAAATTGAAGGGATTAAAGTGATCACAGTTCAAACGCTCCGTGAGGCTTTAGATCTCG
CGTTGAGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H1MME2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

63.193

98.904

0.625
  radA Streptococcus pneumoniae Rx1

63.193

98.904

0.625
  radA Streptococcus pneumoniae D39

63.193

98.904

0.625
  radA Streptococcus pneumoniae R6

63.193

98.904

0.625
  radA Streptococcus pneumoniae TIGR4

63.193

98.904

0.625
  radA Streptococcus mitis SK321

63.193

98.904

0.625
  radA Bacillus subtilis subsp. subtilis str. 168

59.3

100

0.594

Multiple sequence alignment