Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CVOLT_RS06115 Genome accession   NZ_CP043428
Coordinates   1176666..1177592 (-) Length   308 a.a.
NCBI ID   WP_039665923.1    Uniprot ID   A0AAE5YG63
Organism   Campylobacter volucris strain LMG 24380     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1171666..1182592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVOLT_RS06095 (CVOLT_1208) cysK 1172712..1173614 (-) 903 WP_039665921.1 cysteine synthase A -
  CVOLT_RS06100 (CVOLT_1209) - 1173698..1174000 (-) 303 WP_039666305.1 HU family DNA-binding protein -
  CVOLT_RS06105 (CVOLT_1210) - 1174086..1175168 (-) 1083 WP_039665922.1 hypothetical protein -
  CVOLT_RS06110 (CVOLT_1211) - 1175177..1176676 (-) 1500 WP_149104689.1 MBOAT family O-acyltransferase -
  CVOLT_RS06115 (CVOLT_1212) waaF 1176666..1177592 (-) 927 WP_039665923.1 lipopolysaccharide heptosyltransferase II Regulator
  CVOLT_RS06120 (CVOLT_1213) - 1177639..1178448 (+) 810 WP_039665924.1 glycosyltransferase family 2 protein -
  CVOLT_RS08155 - 1178453..1179334 (-) 882 WP_342353696.1 hypothetical protein -
  CVOLT_RS08160 - 1179255..1180208 (-) 954 WP_342353697.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  CVOLT_RS08165 - 1180214..1180372 (-) 159 WP_342353698.1 hypothetical protein -
  CVOLT_RS06130 (CVOLT_1215) - 1180372..1181136 (-) 765 WP_039665925.1 glucosamine-6-P synthase, glutaminase subunit PtmA -
  CVOLT_RS06135 (CVOLT_1216) - 1181136..1181843 (-) 708 WP_039665926.1 flagellin modification protein, acylneuraminate cytidylyltransferase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34988.24 Da        Isoelectric Point: 10.4302

>NTDB_id=384013 CVOLT_RS06115 WP_039665923.1 1176666..1177592(-) (waaF) [Campylobacter volucris strain LMG 24380]
MKIFINLPTWLGDAVMVSATIYAIKEKCPDANFLFYGSFVSTELFKNLQNSKILVENKKQRFSQIFKIRKELGKFDLAIS
FRSAFSSKIILNLIKAKKRFYFDKNQNKNEHQVLKYLKFIENSLNFKANSNSLKLPIKAKTTKKILGINAGAHYGSAKRW
NSEYFAQVAKEFASTHKIIIFGVKTEQKICDEIQNLLLKDGVQAKNLCGKTSIFTLCKNISMLDILITNDSGPMHIGAAY
GIKTIAIFGSTNFHQTSPWQKNARLAHLNLACMPCMKRICPLKHHACMNDLKPQIVIDKAKDLLKNDI

Nucleotide


Download         Length: 927 bp        

>NTDB_id=384013 CVOLT_RS06115 WP_039665923.1 1176666..1177592(-) (waaF) [Campylobacter volucris strain LMG 24380]
ATGAAAATTTTTATAAATCTACCTACTTGGCTTGGCGATGCTGTTATGGTAAGTGCGACAATTTATGCTATAAAAGAAAA
ATGTCCAGATGCTAATTTTTTATTTTATGGTTCTTTTGTTAGCACAGAACTTTTTAAAAATTTACAAAATTCAAAAATAT
TAGTAGAAAATAAAAAACAAAGATTTTCTCAAATTTTTAAAATCAGAAAAGAACTTGGTAAATTTGATCTTGCTATTAGT
TTTAGATCGGCTTTTTCAAGTAAGATAATATTAAATTTAATAAAAGCAAAAAAAAGATTTTATTTTGATAAAAATCAAAA
TAAAAATGAACATCAAGTTTTAAAATACTTAAAATTTATAGAAAATTCTTTAAATTTTAAAGCTAATTCAAATTCTTTAA
AACTACCCATAAAAGCAAAAACTACGAAAAAAATTCTAGGGATAAATGCTGGAGCTCACTATGGAAGTGCTAAAAGATGG
AATAGTGAGTATTTTGCACAAGTAGCAAAAGAATTTGCATCTACTCATAAAATAATAATTTTTGGTGTAAAAACCGAACA
AAAAATATGCGATGAAATACAAAATTTACTTTTAAAAGATGGGGTGCAAGCTAAAAATTTATGTGGAAAAACTAGCATTT
TTACTTTATGTAAAAACATTTCTATGCTAGATATTTTAATCACTAACGATAGCGGACCTATGCACATAGGCGCAGCTTAT
GGAATAAAAACCATAGCTATTTTTGGATCGACTAATTTTCATCAAACATCACCTTGGCAAAAAAATGCAAGATTAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGAAAAGAATTTGTCCATTAAAGCATCACGCTTGTATGAATGATTTAAAACCAC
AAATTGTTATAGATAAAGCAAAGGATTTATTAAAAAATGATATTTAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(76-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.759

100

0.623

Multiple sequence alignment