Detailed information NTG0384003

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CVOLT_RS01920
• Genome accession: NZ_CP043428
• Coordinates: 355325..356710 (+)
• Length: 461 a.a.
• NCBI ID: WP_039666237.1
• Uniprot ID: -
• Organism: Campylobacter volucris strain LMG 24380
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 350325..361710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVOLT_RS01905 (CVOLT_0378)	-	350700..351344 (+)	645	WP_039665202.1	HAD family hydrolase	-
CVOLT_RS01910 (CVOLT_0379)	nifJ	351464..355018 (+)	3555	WP_039665203.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
CVOLT_RS01915 (CVOLT_0380)	-	355021..355347 (+)	327	WP_039665204.1	hypothetical protein	-
CVOLT_RS01920 (CVOLT_0381)	ctsD	355325..356710 (+)	1386	WP_039666237.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CVOLT_RS01925 (CVOLT_0382)	-	356691..357029 (+)	339	WP_052243152.1	transformation system, membrane protein CtsX	-
CVOLT_RS01930 (CVOLT_0383)	-	357016..358575 (+)	1560	WP_039665205.1	transformation system, type II secretion system ATPase CtsE	-
CVOLT_RS01935 (CVOLT_0384)	-	358572..359735 (+)	1164	WP_132038053.1	type II secretion system F family protein	-
CVOLT_RS01940 (CVOLT_0385)	-	359732..360487 (-)	756	WP_039665207.1	TSUP family transporter	-
CVOLT_RS01945 (CVOLT_0386)	-	360472..361221 (-)	750	WP_039665208.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 52395.19 Da
• Isoelectric Point: 8.2312

>NTDB_id=384003 CVOLT_RS01920 WP_039666237.1 355325..356710(+) (ctsD) [Campylobacter volucris strain LMG 24380]
MIILLFISICFTQVFANSCHQRVFDISVDSKSTLLEILNELGKECGFSIIVKDSLAQKKLNTAQNYLHIRKMSLREIFNL
LLKENNLAYDYEKNILKIYGKVVKTFKIHYISSIREGQSITKASVDSRPRQGEYEHSNKEADNLVISTDRFDFWEKIAEE
IQALLDENTTKPIINTNAGIITLQATPYEITRVQNYLNDLNKRLKKQVLIDVSIVAVHLNKNHSSGINWQELAFRLNGDD
KDFIINKGGIKNINLKANIQTQAIINLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGSTISETYN
NYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVEDSQTLILGGLISKNSI
NNQNEINLLSKIPIFGLLFQGKQNIEDVSEIVFIIKPTIIKEDKKILNLKDLGFKNEDHMF

Nucleotide

• Length: 1386 bp

>NTDB_id=384003 CVOLT_RS01920 WP_039666237.1 355325..356710(+) (ctsD) [Campylobacter volucris strain LMG 24380]
ATAATAATATTATTATTTATTAGTATATGTTTTACTCAAGTTTTTGCAAATTCATGTCATCAAAGGGTTTTTGATATCAG
TGTTGATTCTAAAAGTACATTATTAGAAATTTTAAATGAGCTTGGTAAAGAATGTGGCTTTAGTATCATTGTAAAAGATT
CTTTAGCGCAAAAGAAACTAAATACCGCTCAAAATTATCTTCACATTAGAAAAATGTCTTTAAGAGAAATTTTTAATCTT
TTGTTGAAAGAAAATAATCTTGCTTATGATTATGAAAAAAATATTTTAAAAATTTATGGAAAAGTAGTAAAGACTTTTAA
AATTCATTATATTAGCTCTATTAGAGAAGGACAAAGTATCACTAAAGCTTCAGTGGATTCAAGACCAAGACAAGGAGAAT
ATGAACATTCTAATAAAGAAGCAGATAATTTGGTTATAAGCACTGATAGGTTTGATTTTTGGGAGAAAATTGCAGAAGAA
ATTCAAGCTTTACTTGATGAAAATACTACTAAGCCCATTATTAATACCAATGCGGGAATCATTACCTTACAAGCTACTCC
ATATGAAATTACAAGGGTGCAAAATTATTTAAATGATTTAAATAAACGATTGAAAAAACAAGTTTTAATTGATGTGAGTA
TAGTTGCTGTACATTTAAATAAAAATCATTCTAGTGGAATTAATTGGCAAGAACTCGCTTTTAGGTTAAATGGCGATGAT
AAAGATTTTATCATAAATAAAGGTGGTATTAAAAATATCAATTTAAAAGCAAATATCCAAACTCAAGCAATTATAAATTT
ATTGCAAGAAAATGGTAAAACCACGGTGCTTTCTAATCCAAAACTTATGGCTTTAAATAATCAACAAGCAATTATTTCTA
TAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAAGGCACTGAAAATGGAAGTACAATTAGTGAAACTTATAAT
AATTATTCTATTTTTGTAGGAATTTTACTTAATATTTTGCCAGAAATTTCAGATGATCATAAGATTATGCTTAGGATAAA
TCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATCGTCAAAATAAACCAAGAAATATTGCGCCCGATACTATAC
AAAAAAAGCTTTCAACTGTTGTAGAAGTGGAAGATTCTCAAACTTTAATTTTAGGTGGTTTGATTAGTAAAAATAGCATT
AACAATCAAAATGAAATCAATTTACTTTCTAAAATACCTATTTTTGGATTATTATTTCAAGGTAAGCAAAATATAGAAGA
TGTTAGCGAAATTGTTTTTATCATCAAGCCAACTATAATCAAAGAAGATAAAAAGATACTAAATTTAAAAGATTTGGGTT
TTAAAAATGAAGATCATATGTTTTAG

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (267-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	59.701	100	0.607