Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CSPT_RS05180 Genome accession   NZ_CP043427
Coordinates   1034478..1034858 (+) Length   126 a.a.
NCBI ID   WP_089182626.1    Uniprot ID   -
Organism   Campylobacter sputorum subsp. sputorum strain LMG 7795     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1029478..1039858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSPT_RS05160 (CSPT_1016) - 1030343..1031440 (+) 1098 WP_089182622.1 CinA family protein -
  CSPT_RS05165 (CSPT_1017) ilvC 1031507..1032529 (+) 1023 WP_089182623.1 ketol-acid reductoisomerase -
  CSPT_RS05170 (CSPT_1018) - 1032570..1033727 (+) 1158 WP_143297535.1 divergent polysaccharide deacetylase family protein -
  CSPT_RS05175 (CSPT_1019) dprA 1033711..1034481 (+) 771 WP_089182625.1 DNA-processing protein DprA Machinery gene
  CSPT_RS05180 (CSPT_1020) dprB 1034478..1034858 (+) 381 WP_089182626.1 Holliday junction resolvase RuvX Machinery gene
  CSPT_RS05185 (CSPT_1021) - 1034921..1036876 (+) 1956 WP_089182627.1 methyl-accepting chemotaxis protein -
  CSPT_RS05190 (CSPT_1022) - 1036919..1037410 (-) 492 WP_089182628.1 HIT domain-containing protein -
  CSPT_RS05195 (CSPT_1023) trpC 1037413..1038195 (-) 783 WP_089182629.1 indole-3-glycerol phosphate synthase TrpC -
  CSPT_RS05200 (CSPT_1024) - 1038192..1039445 (-) 1254 WP_089182630.1 lipopolysaccharide assembly protein LapB -
  CSPT_RS05205 (CSPT_1025) - 1039418..1039783 (-) 366 WP_089182631.1 YkgJ family cysteine cluster protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14139.48 Da        Isoelectric Point: 9.6749

>NTDB_id=383992 CSPT_RS05180 WP_089182626.1 1034478..1034858(+) (dprB) [Campylobacter sputorum subsp. sputorum strain LMG 7795]
MIVAIDVGLKRIGVAISYENGVVLPLNAVIRKNRNQASKEISQLLQDYKAKKLVVGIPLGGSSEDEMTRRIKHFVNLIYF
DGEIIFIDESFSSKEASDFAVINHKKKDGKLDSLSAMIILKRYIEN

Nucleotide


Download         Length: 381 bp        

>NTDB_id=383992 CSPT_RS05180 WP_089182626.1 1034478..1034858(+) (dprB) [Campylobacter sputorum subsp. sputorum strain LMG 7795]
ATGATAGTAGCTATAGATGTTGGCTTAAAAAGAATAGGAGTTGCCATATCTTATGAAAATGGAGTAGTTTTGCCACTAAA
CGCAGTCATACGCAAAAATCGCAATCAAGCTTCAAAAGAAATAAGTCAGTTACTACAAGATTATAAAGCAAAAAAACTTG
TTGTTGGTATCCCACTTGGCGGAAGTAGCGAAGATGAGATGACTAGACGCATAAAACACTTTGTAAATTTAATATATTTT
GATGGTGAGATAATTTTTATTGATGAGAGTTTTTCAAGCAAGGAAGCTAGCGATTTTGCCGTTATAAATCATAAGAAAAA
AGATGGAAAACTAGATAGTTTAAGTGCAATGATAATACTTAAAAGATATATTGAAAATTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.376

100

0.532

Multiple sequence alignment