Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CSPT_RS04725 Genome accession   NZ_CP043427
Coordinates   945494..946837 (+) Length   447 a.a.
NCBI ID   WP_089182545.1    Uniprot ID   -
Organism   Campylobacter sputorum subsp. sputorum strain LMG 7795     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 940494..951837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSPT_RS04705 (CSPT_0929) brnQ 940595..941908 (-) 1314 WP_235610043.1 branched-chain amino acid transport system II carrier protein -
  CSPT_RS04710 (CSPT_0930) - 942289..943215 (+) 927 WP_089182542.1 methyl-accepting chemotaxis protein -
  CSPT_RS04715 - 943240..943848 (-) 609 WP_089182543.1 methyl-accepting chemotaxis protein -
  CSPT_RS04720 - 944147..945394 (-) 1248 WP_089182544.1 methyl-accepting chemotaxis protein -
  CSPT_RS04725 (CSPT_0932) radA 945494..946837 (+) 1344 WP_089182545.1 DNA repair protein RadA Machinery gene
  CSPT_RS04730 (CSPT_0933) mnmG 946889..948760 (+) 1872 WP_089182546.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  CSPT_RS04735 (CSPT_0934) - 948763..948975 (+) 213 WP_089182547.1 hypothetical protein -
  CSPT_RS04740 (CSPT_0935) - 948972..949460 (-) 489 WP_089182548.1 DUF4149 domain-containing protein -
  CSPT_RS04745 (CSPT_0936) - 949457..949939 (-) 483 WP_089182549.1 GNAT family N-acetyltransferase -
  CSPT_RS04750 (CSPT_0937) prmC 949932..950729 (-) 798 WP_089182550.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49408.24 Da        Isoelectric Point: 7.8949

>NTDB_id=383990 CSPT_RS04725 WP_089182545.1 945494..946837(+) (radA) [Campylobacter sputorum subsp. sputorum strain LMG 7795]
MAKTKTTIFECEHCGNQQNRWLGKCPECGAFNSFVELKADQIKALKEISKIHISTSKAKPISEVEIEKISRLSTEDEELD
LVLGGGVVEGSLVLIGGSPGIGKSTLLLKIASNLSKNDRNVLYISGEESESQIKMRADRLNAINKNLFLLTEICLENIKS
ELANKEYKIIVVDSIQTLYSENISSAPGSVSQVREITFELMRIAKEKNICIFIIGHITKEGSIAGPRVLEHMVDVVLYFE
GDASKELRILRGFKNRFGSTSEVGIFEMSQNGLIPAKNIASKFFTRGKAISGSAVTVIMEGSRPLVVEIQALVCESSYPK
RSSTGYDRNRLDMILALLERKIELPLGHYDVFINVIGGVKINETAADLAVVAAIVSSFKNRPISKETIFIGEVSLNGEIR
DVYNLDIRLKEASIQKFKNAIVPLKTTSNSTIKTFIAKEINQVLDWM

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=383990 CSPT_RS04725 WP_089182545.1 945494..946837(+) (radA) [Campylobacter sputorum subsp. sputorum strain LMG 7795]
ATGGCAAAAACAAAAACAACGATATTTGAGTGTGAGCATTGTGGCAATCAACAAAACAGATGGCTTGGAAAATGCCCAGA
ATGTGGTGCTTTTAATAGTTTTGTAGAGTTAAAAGCAGATCAAATAAAAGCCTTAAAGGAAATTTCTAAAATTCACATTA
GCACTTCAAAAGCAAAACCTATCAGTGAAGTTGAGATAGAAAAAATTTCAAGACTTAGCACAGAAGATGAAGAGCTTGAT
TTGGTTTTAGGTGGCGGTGTTGTAGAAGGTTCTTTGGTGCTTATTGGCGGAAGTCCTGGGATTGGAAAATCAACCCTACT
TTTAAAAATAGCTTCAAATTTAAGCAAAAATGATAGAAATGTTTTATATATAAGCGGCGAAGAAAGCGAAAGTCAGATTA
AAATGCGAGCAGATAGGCTTAATGCAATAAATAAAAATCTATTTTTATTAACAGAAATTTGCCTTGAAAATATCAAATCT
GAACTAGCAAATAAAGAATATAAAATTATCGTAGTTGATAGCATACAAACACTTTATAGTGAAAATATAAGCTCAGCTCC
TGGAAGCGTTTCACAAGTAAGAGAGATTACATTTGAACTTATGCGTATAGCAAAAGAAAAAAATATATGCATTTTTATAA
TCGGACATATAACAAAAGAAGGTAGCATTGCGGGTCCAAGGGTGCTAGAACATATGGTTGATGTAGTTTTGTATTTTGAA
GGAGATGCGAGTAAAGAACTTAGAATTTTAAGAGGATTTAAAAATAGATTTGGATCAACTAGCGAAGTTGGAATTTTTGA
AATGAGTCAAAATGGTTTAATACCTGCAAAAAACATCGCAAGTAAATTTTTTACAAGAGGTAAAGCAATAAGCGGAAGTG
CAGTAACCGTCATAATGGAGGGCTCTCGCCCATTAGTCGTAGAAATTCAAGCTTTGGTTTGCGAAAGTTCATACCCAAAA
AGAAGCTCAACAGGATATGATAGAAACAGACTTGATATGATACTAGCTTTGCTTGAGAGAAAAATAGAGCTTCCTTTGGG
GCATTATGATGTTTTTATAAATGTTATAGGCGGAGTTAAGATAAATGAAACCGCAGCAGATCTTGCCGTGGTTGCTGCGA
TAGTTAGTAGCTTTAAAAACAGACCAATAAGTAAAGAAACTATTTTTATAGGAGAAGTTAGTTTAAATGGGGAAATAAGA
GATGTTTATAACTTAGATATAAGGCTAAAAGAAGCAAGTATACAAAAATTTAAAAATGCTATAGTCCCACTAAAAACAAC
ATCTAATAGCACAATAAAAACTTTCATAGCAAAAGAAATAAATCAAGTTTTAGACTGGATGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(350-424)

AAA domain (AAA_25)

(67-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.168

95.749

0.49
  radA Streptococcus pneumoniae Rx1

47.085

99.776

0.47
  radA Streptococcus pneumoniae D39

47.085

99.776

0.47
  radA Streptococcus pneumoniae R6

47.085

99.776

0.47
  radA Streptococcus pneumoniae TIGR4

47.085

99.776

0.47
  radA Streptococcus mitis SK321

47.897

95.749

0.459
  radA Streptococcus mitis NCTC 12261

47.897

95.749

0.459

Multiple sequence alignment