Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CLCT_RS04585 Genome accession   NZ_CP043426
Coordinates   875717..876445 (-) Length   242 a.a.
NCBI ID   WP_149062401.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain LMG 21009     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 870717..881445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLCT_RS04545 (CLCT_0903) holA 871386..872351 (+) 966 WP_149062398.1 DNA polymerase III subunit delta -
  CLCT_RS04550 (CLCT_0904) rpsF 872442..872816 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  CLCT_RS04555 (CLCT_0905) - 872820..873347 (+) 528 WP_115645698.1 single-stranded DNA-binding protein -
  CLCT_RS04560 (CLCT_0906) rpsR 873358..873618 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CLCT_RS04565 (CLCT_0907) - 873670..874311 (+) 642 WP_149062399.1 MarC family protein -
  CLCT_RS04570 (CLCT_0908) - 874293..874715 (-) 423 WP_039668499.1 hypothetical protein -
  CLCT_RS04575 (CLCT_0909) - 874712..875440 (-) 729 WP_052239458.1 type II secretion system protein -
  CLCT_RS04580 (CLCT_0910) - 875424..875720 (-) 297 WP_149062400.1 hypothetical protein -
  CLCT_RS04585 (CLCT_0911) proC 875717..876445 (-) 729 WP_149062401.1 pyrroline-5-carboxylate reductase Machinery gene
  CLCT_RS04590 (CLCT_0912) fliW 876445..876840 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  CLCT_RS04595 (CLCT_0913) bamD 877017..877673 (+) 657 WP_039668502.1 outer membrane protein assembly factor BamD -
  CLCT_RS04600 (CLCT_0914) lon 877673..880051 (+) 2379 WP_149062402.1 endopeptidase La -
  CLCT_RS07785 (CLCT_0915) - 880067..881443 (-) 1377 WP_039668504.1 MCP-domain energy taxis signal transduction protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26565.81 Da        Isoelectric Point: 7.2639

>NTDB_id=383976 CLCT_RS04585 WP_149062401.1 875717..876445(-) (proC) [Campylobacter lari subsp. concheus strain LMG 21009]
MSEIYILGNGAMASAIAKGLKDTYKVVVVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDLYKHEIISLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=383976 CLCT_RS04585 WP_149062401.1 875717..876445(-) (proC) [Campylobacter lari subsp. concheus strain LMG 21009]
ATGTCTGAAATTTATATTTTAGGAAATGGCGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TGTTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCACAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAACATGAAATTATATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGCTTACGCG
TGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTGACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57

Multiple sequence alignment