Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   HC658_RS18615 Genome accession   NZ_CP051466
Coordinates   3613087..3614220 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis subsp. subtilis strain UCMB5021     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3608087..3619220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC658_RS18575 (HC658_36560) ywnA 3608257..3608658 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  HC658_RS18580 (HC658_36570) ureC 3608793..3610502 (-) 1710 WP_003243090.1 urease subunit alpha -
  HC658_RS18585 (HC658_36580) ureB 3610499..3610873 (-) 375 WP_015251023.1 urease subunit beta -
  HC658_RS18590 (HC658_36590) ureA 3610870..3611187 (-) 318 WP_003227724.1 urease subunit gamma -
  HC658_RS18595 (HC658_36600) - 3611382..3611540 (-) 159 WP_142395482.1 hypothetical protein -
  HC658_RS21190 - 3611811..3611979 (-) 169 Protein_3620 urea ABC transporter substrate-binding protein -
  HC658_RS18605 (HC658_36620) csbD 3612191..3612379 (-) 189 WP_003227718.1 stress response protein CsbD -
  HC658_RS18610 (HC658_36630) - 3612452..3612931 (-) 480 WP_003244390.1 hypothetical protein -
  HC658_RS18615 (HC658_36640) rapC 3613087..3614220 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  HC658_RS18620 (HC658_36650) moaA 3614412..3615437 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  HC658_RS18625 (HC658_36660) fdhD 3615453..3616241 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  HC658_RS18630 (HC658_36670) - 3616474..3616635 (-) 162 WP_003227706.1 hypothetical protein -
  HC658_RS18635 (HC658_36680) ywmD 3616730..3617404 (-) 675 WP_003243553.1 VWA domain-containing protein -
  HC658_RS18640 - 3617457..3617597 (-) 141 WP_003227702.1 hypothetical protein -
  HC658_RS18645 (HC658_36690) ywmC 3617728..3618411 (-) 684 WP_019712592.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=383944 HC658_RS18615 WP_003227715.1 3613087..3614220(-) (rapC) [Bacillus subtilis subsp. subtilis strain UCMB5021]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=383944 HC658_RS18615 WP_003227715.1 3613087..3614220(-) (rapC) [Bacillus subtilis subsp. subtilis strain UCMB5021]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424