Detailed information NTG0383937

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: BSR23_RS16335
• Genome accession: NZ_CP043421
• Coordinates: 3210540..3211586 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain MVP1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3205540..3216586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSR23_RS16310 (BSR23_016310)	rplC	3206113..3206742 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
BSR23_RS16315 (BSR23_016315)	rpsJ	3206757..3207068 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
BSR23_RS16320 (BSR23_016320)	rpmE	3207526..3207747 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
BSR23_RS16330 (BSR23_016330)	priA	3208042..3210246 (+)	2205	WP_025789388.1	primosomal protein N'	-
BSR23_RS16335 (BSR23_016335)	cytR	3210540..3211586 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
BSR23_RS16340 (BSR23_016340)	ftsN	3211763..3212308 (+)	546	WP_005481405.1	cell division protein FtsN	-
BSR23_RS16345 (BSR23_016345)	hslV	3212473..3213024 (+)	552	WP_025789387.1	ATP-dependent protease subunit HslV	-
BSR23_RS16350 (BSR23_016350)	hslU	3213048..3214379 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
BSR23_RS16355 (BSR23_016355)	-	3214805..3215029 (-)	225	WP_005489715.1	hypothetical protein	-
BSR23_RS16360 (BSR23_016360)	-	3215189..3215338 (-)	150	WP_005489496.1	AlpA family phage regulatory protein	-
BSR23_RS16365 (BSR23_016365)	radC	3215509..3215982 (+)	474	WP_005489555.1	DNA repair protein RadC	-
BSR23_RS16370 (BSR23_016370)	-	3215979..3216410 (+)	432	WP_005489473.1	DUF2787 family protein	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=383937 BSR23_RS16335 WP_254894148.1 3210540..3211586(+) (cytR) [Vibrio parahaemolyticus strain MVP1]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=383937 BSR23_RS16335 WP_254894148.1 3210540..3211586(+) (cytR) [Vibrio parahaemolyticus strain MVP1]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCTGTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871