Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BSR23_RS10885 Genome accession   NZ_CP043421
Coordinates   2090810..2092231 (+) Length   473 a.a.
NCBI ID   WP_077672719.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MVP1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2085810..2097231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR23_RS10865 (BSR23_010865) - 2085867..2086619 (-) 753 WP_176092055.1 adenosylcobinamide-GDP ribazoletransferase -
  BSR23_RS10870 (BSR23_010870) cobT 2086664..2087707 (-) 1044 WP_077672718.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  BSR23_RS10875 (BSR23_010875) - 2088391..2089086 (+) 696 WP_017448627.1 NAD(P)H-binding protein -
  BSR23_RS10880 (BSR23_010880) - 2089281..2090654 (+) 1374 WP_029795143.1 L-cystine transporter -
  BSR23_RS10885 (BSR23_010885) sbcB 2090810..2092231 (+) 1422 WP_077672719.1 exodeoxyribonuclease I Machinery gene
  BSR23_RS10890 (BSR23_010890) - 2092287..2092661 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  BSR23_RS10895 (BSR23_010895) - 2092663..2093340 (+) 678 WP_020840482.1 LrgB family protein -
  BSR23_RS10900 (BSR23_010900) cdd 2093704..2094591 (+) 888 WP_025505218.1 cytidine deaminase -
  BSR23_RS10905 (BSR23_010905) purT 2094739..2095914 (+) 1176 WP_023584297.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  BSR23_RS10910 (BSR23_010910) - 2096016..2096666 (-) 651 WP_077672720.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54642.97 Da        Isoelectric Point: 4.9813

>NTDB_id=383927 BSR23_RS10885 WP_077672719.1 2090810..2092231(+) (sbcB) [Vibrio parahaemolyticus strain MVP1]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFENQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=383927 BSR23_RS10885 WP_077672719.1 2090810..2092231(+) (sbcB) [Vibrio parahaemolyticus strain MVP1]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAGGGTCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCGCCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAACCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment