Detailed information NTG0383914

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BSR23_RS03460
• Genome accession: NZ_CP043421
• Coordinates: 655452..656441 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain MVP1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 650452..661441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSR23_RS03425 (BSR23_003425)	ftsB	650460..650741 (+)	282	WP_005455577.1	cell division protein FtsB	-
BSR23_RS03430 (BSR23_003430)	ispD	650743..651447 (+)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BSR23_RS03435 (BSR23_003435)	ispF	651465..651941 (+)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BSR23_RS03440 (BSR23_003440)	truD	651988..653031 (+)	1044	WP_077672094.1	tRNA pseudouridine(13) synthase TruD	-
BSR23_RS03445 (BSR23_003445)	surE	653031..653807 (+)	777	WP_077672095.1	5'/3'-nucleotidase SurE	-
BSR23_RS03450 (BSR23_003450)	-	653807..654433 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BSR23_RS03455 (BSR23_003455)	-	654448..655371 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
BSR23_RS03460 (BSR23_003460)	rpoS	655452..656441 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
BSR23_RS03465 (BSR23_003465)	mutS	656520..659081 (-)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
BSR23_RS03470 (BSR23_003470)	pncC	659166..659648 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
BSR23_RS03475 (BSR23_003475)	recA	659849..660892 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=383914 BSR23_RS03460 WP_005478537.1 655452..656441(+) (rpoS) [Vibrio parahaemolyticus strain MVP1]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=383914 BSR23_RS03460 WP_005478537.1 655452..656441(+) (rpoS) [Vibrio parahaemolyticus strain MVP1]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851