Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   CYAN7822_RS12250 Genome accession   NC_014501
Coordinates   2787629..2791078 (-) Length   1149 a.a.
NCBI ID   WP_013322589.1    Uniprot ID   -
Organism   Gloeothece verrucosa PCC 7822     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2782629..2796078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYAN7822_RS12230 (Cyan7822_2508) - 2783576..2784313 (+) 738 WP_013322585.1 dienelactone hydrolase family protein -
  CYAN7822_RS12235 (Cyan7822_2509) - 2784516..2784716 (+) 201 WP_013322586.1 hypothetical protein -
  CYAN7822_RS12240 (Cyan7822_2510) - 2784761..2785870 (-) 1110 WP_013322587.1 AbrB family transcriptional regulator -
  CYAN7822_RS12245 (Cyan7822_2511) - 2785849..2787459 (-) 1611 WP_013322588.1 SpoIID/LytB domain-containing protein -
  CYAN7822_RS12250 (Cyan7822_2512) pilL-C 2787629..2791078 (-) 3450 WP_013322589.1 hybrid sensor histidine kinase/response regulator Machinery gene
  CYAN7822_RS12255 (Cyan7822_2513) trpD 2791371..2792417 (-) 1047 WP_013322590.1 anthranilate phosphoribosyltransferase -
  CYAN7822_RS12260 (Cyan7822_2514) - 2792622..2793368 (+) 747 WP_013322591.1 ATP-binding cassette domain-containing protein -
  CYAN7822_RS12265 (Cyan7822_2515) - 2793467..2794258 (-) 792 WP_013322592.1 response regulator transcription factor -
  CYAN7822_RS12270 (Cyan7822_2516) - 2794573..2794821 (+) 249 WP_013322593.1 DUF6761 family protein -
  CYAN7822_RS12275 (Cyan7822_2517) grxD 2794883..2795227 (-) 345 WP_013322594.1 Grx4 family monothiol glutaredoxin -

Sequence

Protein


Download         Length: 1149 a.a.        Molecular weight: 128246.14 Da        Isoelectric Point: 4.4493

>NTDB_id=38381 CYAN7822_RS12250 WP_013322589.1 2787629..2791078(-) (pilL-C) [Gloeothece verrucosa PCC 7822]
MLRHDPDNLFEDDLAEFLDSFDDKDSSSFIDVYREKKIETSSEDEMEDLASFFEDNFEDLDDNSTEVNLFSSLADSSSDE
EITSVPLPSDQEIQEIFSEDHEGEKDNHSGVILSTNEIIDVEDNLINAHTLNLSEPNEDDQAILSLFTENLTDEDINYPE
TLKQKQDPFFFEPEESEPENPWDELEQLLADDNRSSSLSVEIPPILKVPIENKADNSLPDFYESLEELDHLLEIPATHLA
TELNSRVDIEQLEAIINAPCGTEIDQLSKTSVSGKVEPRSGLSKDSEIIDDLDKEINELFRKTVNQSIGSKPAVSQKKPA
KQKSIEQTMRVPIKQLDNLSNLIGELVVKRNRLEQDQERLRLFLDNLLNQVQQLSDVGGRMQDLYERTLLEGALLASRNR
ARQDNQTKSLNSNTSTSEGNSLFDQDLDALEMDRFTDFHLLSQEMIELIVRVRESASDIQFIVDETDQVARSLRQVSTQL
QEGMTKSRMVPFAQSADHLPRAIRDISVKLNKQAKLQVEGRDVLIDKMIVEHLSSPMIHLVNNAMTHGIESPEERIQKGK
PPEGRILVRAFIQGNQTVISISDDGAGIDVNRVKRKAIEKELITREEANILTEQEVYDFLFHPGFSTKDKADDFAGRGVG
LDVVRKEMIEVRGTVTIDSALGKGTTFTIRLPLTLSISKALCCLSNHFRIAFPMDGVEDMKDFLPGEIKTNAQGEPCIPW
YEGTIPFQPLNKLLTFNRYLSRGNVYGGRQEEDTVSIVILRSGGNFLAVQVDQVLGEQEIVIKQIEGPIPKPIGIAGATV
LGDGTVMPIGDVLELIEIAQGKIKPDGSGSPWHKVAMAMQIPLEAKTEPTVLIVDDSITVREILSLSFSKSGYRVEQARD
GQEAWEKLRSGLPCDIVFCDIEMPRMNGLELLSNIQKDEKLAHLPVAVLSSRGAEKHRKVAAKLGASGYFTKPYTEKDLL
DAAKRMIAGDVLLAGSIRPKRKPKVATKTIPPTPIGQTQSKNPRLTVPGTSLPPSNYRVLIIDDSVMVREMLSMTFGKVG
YEIEQARDGQEAWEKLRSGLTCDLILCDIEMPRMNGLELLSRLQEDAKLSAIPIAMITSRGAQKMQNIAAERGAKGYFVK
PYIDSVLLDSAKRLIAGEVLLERDSKVEG

Nucleotide


Download         Length: 3450 bp        

>NTDB_id=38381 CYAN7822_RS12250 WP_013322589.1 2787629..2791078(-) (pilL-C) [Gloeothece verrucosa PCC 7822]
ATGCTACGCCATGACCCTGACAATTTATTTGAGGATGATCTAGCTGAATTTTTAGATAGTTTTGACGATAAAGACTCTTC
ATCTTTTATTGATGTTTACAGAGAGAAGAAGATTGAAACTTCCTCTGAAGATGAGATGGAGGATTTAGCGAGTTTTTTTG
AAGATAATTTTGAGGATCTAGACGACAATTCAACGGAGGTAAACTTGTTTTCTAGCCTAGCTGATTCAAGCTCAGACGAA
GAAATAACAAGTGTTCCATTGCCATCAGACCAAGAAATTCAAGAAATTTTTAGTGAAGATCATGAAGGGGAAAAAGATAA
TCATTCAGGAGTCATCTTAAGTACAAATGAAATTATAGATGTTGAGGATAATCTCATTAATGCTCATACGTTAAATTTAT
CCGAGCCGAATGAAGATGATCAAGCAATTCTCAGCTTATTCACCGAAAACTTAACGGATGAAGATATTAATTATCCAGAA
ACCCTCAAACAAAAACAAGACCCCTTCTTTTTCGAGCCAGAAGAATCCGAACCAGAGAATCCTTGGGATGAACTAGAGCA
ACTACTCGCTGACGATAATAGATCCTCAAGCCTTTCAGTAGAAATTCCTCCAATATTAAAAGTTCCTATAGAAAATAAAG
CTGATAACTCCCTTCCCGACTTCTACGAATCCTTAGAAGAACTGGATCACCTGTTGGAAATACCAGCAACCCATTTAGCA
ACAGAACTCAATAGCCGAGTGGATATTGAGCAGTTAGAAGCGATAATTAATGCTCCTTGTGGCACAGAAATTGACCAGTT
ATCTAAGACTTCAGTATCTGGAAAGGTAGAACCCAGATCGGGATTGTCAAAAGATAGTGAGATTATCGACGATTTAGATA
AAGAGATCAACGAACTATTCAGAAAAACCGTCAATCAAAGTATTGGCTCTAAGCCGGCCGTTAGTCAAAAGAAACCTGCC
AAGCAAAAAAGTATCGAGCAAACCATGCGGGTTCCCATCAAACAACTCGACAATCTTAGTAACTTGATCGGGGAATTGGT
GGTCAAACGGAATCGACTCGAACAAGACCAAGAACGTCTGAGATTATTCTTAGATAACTTACTCAATCAGGTACAACAAT
TGAGTGATGTCGGCGGCAGAATGCAAGACCTCTACGAACGAACTCTGCTAGAAGGTGCTTTGCTCGCCAGCCGCAATCGT
GCCAGACAAGATAATCAGACAAAATCCTTAAACAGCAATACTTCAACCTCTGAGGGAAACTCACTGTTTGATCAAGACCT
GGATGCTCTAGAAATGGATCGTTTTACCGACTTCCATTTACTATCTCAAGAAATGATTGAATTAATTGTCAGAGTCCGAG
AATCAGCCTCAGATATTCAATTTATTGTCGATGAAACAGACCAAGTCGCTCGCAGTTTACGACAAGTCAGCACTCAATTG
CAAGAAGGCATGACCAAATCCAGAATGGTTCCCTTTGCTCAAAGTGCGGATCACTTGCCGCGAGCCATTCGAGATATTTC
TGTCAAACTGAATAAACAAGCCAAATTACAGGTAGAAGGACGCGATGTTTTAATTGATAAAATGATCGTCGAACATCTGT
CATCCCCGATGATCCATTTAGTCAATAATGCCATGACTCACGGGATTGAATCGCCTGAAGAAAGAATACAAAAAGGAAAA
CCCCCAGAAGGTCGAATTTTAGTGCGAGCTTTTATTCAAGGGAATCAAACGGTTATTTCTATTTCAGATGATGGGGCCGG
CATTGATGTCAACCGAGTCAAACGCAAAGCCATCGAAAAAGAACTCATCACCCGAGAAGAAGCCAATATCCTCACTGAGC
AAGAGGTGTATGATTTTCTCTTCCATCCAGGTTTTAGTACCAAAGACAAAGCCGATGACTTTGCCGGTAGAGGGGTAGGA
CTCGATGTGGTGCGAAAAGAAATGATTGAGGTGCGAGGCACTGTAACTATTGATTCGGCCCTAGGTAAAGGAACAACTTT
TACCATCCGCCTGCCTTTAACCCTCAGTATTAGTAAAGCCCTCTGTTGTTTGAGCAATCATTTCCGCATAGCTTTTCCGA
TGGATGGGGTAGAAGATATGAAAGACTTCCTACCGGGTGAAATCAAAACCAATGCCCAAGGAGAGCCTTGTATTCCTTGG
TATGAGGGAACAATCCCTTTCCAACCCCTCAATAAATTACTCACCTTCAACCGTTATCTCAGTCGAGGCAATGTTTATGG
CGGCAGACAAGAAGAAGATACTGTTTCTATTGTGATTCTTCGCAGTGGGGGCAATTTTTTAGCGGTTCAAGTGGATCAGG
TATTGGGAGAACAAGAAATTGTTATTAAACAAATAGAAGGCCCCATTCCCAAACCCATTGGTATTGCTGGTGCAACCGTG
TTAGGAGATGGAACGGTAATGCCCATTGGTGATGTGCTAGAACTGATTGAAATCGCTCAAGGAAAAATTAAACCTGATGG
TTCTGGTAGTCCTTGGCATAAAGTGGCCATGGCGATGCAGATTCCTTTAGAAGCGAAAACAGAACCAACCGTTCTCATTG
TGGACGATTCGATTACGGTTCGGGAAATACTCTCTTTAAGTTTTAGTAAGTCCGGCTATCGGGTGGAACAAGCGCGAGAT
GGACAAGAAGCTTGGGAAAAACTGCGTTCAGGTTTACCCTGTGATATCGTTTTCTGTGATATCGAAATGCCGAGAATGAA
TGGGTTAGAATTACTCTCTAATATTCAAAAAGATGAAAAACTTGCTCATCTGCCTGTGGCGGTTTTAAGCTCTCGCGGGG
CAGAAAAACATCGTAAAGTCGCCGCTAAATTAGGGGCTAGTGGTTATTTTACCAAGCCTTACACAGAAAAAGATTTATTG
GATGCGGCTAAACGGATGATCGCCGGCGATGTTCTCTTAGCAGGTAGTATAAGACCCAAGAGAAAGCCTAAAGTGGCCAC
TAAAACCATTCCTCCTACCCCTATTGGTCAAACCCAGTCGAAAAATCCCCGTCTGACTGTTCCTGGAACTTCGCTACCTC
CATCCAACTATCGCGTTTTAATTATTGATGATTCGGTGATGGTACGAGAAATGCTATCTATGACTTTTGGTAAGGTCGGA
TACGAAATCGAACAAGCCCGAGATGGACAAGAAGCTTGGGAAAAATTGCGCTCGGGTTTGACCTGTGATTTAATTCTCTG
TGATATCGAAATGCCGAGAATGAATGGGTTAGAACTGCTTTCTCGTCTTCAAGAAGATGCAAAACTCTCGGCTATCCCCA
TCGCTATGATTACCTCTCGAGGAGCGCAAAAAATGCAGAATATAGCGGCTGAACGCGGGGCTAAGGGCTATTTTGTCAAG
CCTTATATTGATTCGGTTTTACTCGATTCGGCCAAGCGGCTGATTGCCGGGGAAGTCTTGCTAGAAAGAGACTCTAAAGT
GGAAGGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(851-963)

Response regulator receiver domain (Response_reg)

(1019-1128)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(327-483)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(536-674)

CheW-like domain (CheW)

(681-817)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

63.373

81.027

0.513

Multiple sequence alignment