Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   HC659_RS15970 Genome accession   NZ_CP051465
Coordinates   3096698..3097561 (-) Length   287 a.a.
NCBI ID   WP_032722437.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3091698..3102561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS15935 (HC659_31440) mrpE 3091865..3092341 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  HC659_RS15940 (HC659_31450) mrpF 3092341..3092625 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  HC659_RS15945 (HC659_31460) mnhG 3092609..3092983 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  HC659_RS15950 (HC659_31470) yuxO 3093022..3093402 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  HC659_RS15955 (HC659_31480) comA 3093421..3094066 (-) 646 Protein_3095 two-component system response regulator ComA -
  HC659_RS15960 (HC659_31490) comP 3094147..3096459 (-) 2313 WP_032722435.1 histidine kinase Regulator
  HC659_RS15965 (HC659_31500) comX 3096475..3096696 (-) 222 WP_014480704.1 competence pheromone ComX -
  HC659_RS15970 (HC659_31510) comQ 3096698..3097561 (-) 864 WP_032722437.1 polyprenyl synthetase family protein Regulator
  HC659_RS15975 (HC659_31520) degQ 3097746..3097886 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  HC659_RS15980 - 3098108..3098233 (+) 126 WP_003228793.1 hypothetical protein -
  HC659_RS15985 (HC659_31530) - 3098347..3098715 (+) 369 WP_014477834.1 hypothetical protein -
  HC659_RS15990 (HC659_31540) pdeH 3098691..3099920 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  HC659_RS15995 (HC659_31550) pncB 3100057..3101529 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  HC659_RS16000 (HC659_31560) pncA 3101545..3102096 (-) 552 WP_014477836.1 isochorismatase family cysteine hydrolase -

Sequence


Protein


Download         Length: 287 a.a.        Molecular weight: 32833.50 Da        Isoelectric Point: 5.2201

>NTDB_id=383775 HC659_RS15970 WP_032722437.1 3096698..3097561(-) (comQ) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNNNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=383775 HC659_RS15970 WP_032722437.1 3096698..3097561(-) (comQ) [Bacillus subtilis subsp. subtilis strain UCMB5121]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACAATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains


Predicted by InterProScan.

(45-194)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439


Multiple sequence alignment