Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   HC659_RS02405 Genome accession   NZ_CP051465
Coordinates   475489..475923 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470489..480923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS02375 (HC659_04680) ydaD 471136..471996 (+) 861 WP_032722917.1 SDR family oxidoreductase -
  HC659_RS02380 (HC659_04690) lyxE 472012..472515 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  HC659_RS02385 (HC659_04700) ydaF 472603..473154 (+) 552 WP_014478866.1 GNAT family protein -
  HC659_RS02390 (HC659_04710) ydaG 473232..473654 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  HC659_RS02395 (HC659_04730) amj 474160..474969 (+) 810 WP_032722918.1 lipid II flippase Amj -
  HC659_RS02400 (HC659_04740) ydzA 475014..475304 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  HC659_RS02405 (HC659_04750) lrpC 475489..475923 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  HC659_RS02410 (HC659_04760) topB 475988..478171 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  HC659_RS02415 (HC659_04770) ephJ 478374..479462 (+) 1089 WP_003246551.1 lipoprotein -
  HC659_RS02420 (HC659_04780) epsK 479443..480294 (+) 852 WP_089172461.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=383672 HC659_RS02405 WP_003246585.1 475489..475923(+) (lrpC) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=383672 HC659_RS02405 WP_003246585.1 475489..475923(+) (lrpC) [Bacillus subtilis subsp. subtilis strain UCMB5121]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1