Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   FY406_RS09820 Genome accession   NZ_CP043405
Coordinates   1975294..1976187 (+) Length   297 a.a.
NCBI ID   WP_003088678.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1970294..1981187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS09805 (FY406_09805) lepA 1970564..1972402 (-) 1839 WP_003088672.1 translation elongation factor 4 -
  FY406_RS09810 (FY406_09810) - 1972754..1974541 (-) 1788 WP_003088674.1 GbpC/Spa domain-containing protein -
  FY406_RS09815 (FY406_09815) - 1974706..1974969 (-) 264 WP_003088676.1 helix-turn-helix transcriptional regulator -
  FY406_RS09820 (FY406_09820) irvR 1975294..1976187 (+) 894 WP_003088678.1 XRE family transcriptional regulator Regulator
  FY406_RS09825 (FY406_09825) - 1977338..1977715 (-) 378 WP_003088681.1 type II toxin-antitoxin system HicB family antitoxin -
  FY406_RS09830 (FY406_09830) - 1977718..1977924 (-) 207 WP_003088683.1 type II toxin-antitoxin system HicA family toxin -
  FY406_RS09835 (FY406_09835) csn2 1978023..1978685 (-) 663 WP_003088686.1 type II-A CRISPR-associated protein Csn2 -
  FY406_RS09840 (FY406_09840) cas2 1978675..1979019 (-) 345 WP_003088688.1 CRISPR-associated endonuclease Cas2 -
  FY406_RS09845 (FY406_09845) cas1 1979016..1979885 (-) 870 WP_003088691.1 type II CRISPR-associated endonuclease Cas1 -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33299.91 Da        Isoelectric Point: 7.6263

>NTDB_id=383602 FY406_RS09820 WP_003088678.1 1975294..1976187(+) (irvR) [Streptococcus ratti strain ATCC 31377]
MGRGKLTPQDLEDMKVISSNIQRLLTESGMNQSQLASVLNIPKSSLNEYVKGRTLPKAGNIQKIADYFGLQKSDIDPRFS
KSSSSSVLEQISYMARQLNSPRQQKLLDFGKQLLADQKQATGLAAQKHLADSQSSSAAGGAKYQEIVDKFITDEIKHQDN
IHLDNIKKAKDLYQALGHSYKSIVLYGEVSAGTGVWVGHEKQETIKYPAPIPKHDIALRVNGNSMEPLFYNGEVIFVKKT
QEIYHGQFIVVIVNNEAYLKKLYKKDHEIRLISINPHYDDIILQEDDDIEIIGTVIS

Nucleotide


Download         Length: 894 bp        

>NTDB_id=383602 FY406_RS09820 WP_003088678.1 1975294..1976187(+) (irvR) [Streptococcus ratti strain ATCC 31377]
ATGGGACGCGGAAAATTAACACCACAAGATTTAGAAGACATGAAAGTGATCTCCTCCAATATCCAGCGCCTGCTGACAGA
AAGCGGCATGAATCAATCACAGCTTGCATCTGTTCTCAATATTCCTAAAAGCAGCCTCAATGAGTACGTCAAAGGGCGGA
CACTGCCAAAAGCCGGAAATATTCAAAAAATCGCGGATTACTTTGGCTTGCAGAAATCTGATATTGATCCCAGATTTTCT
AAAAGTTCCAGCTCTTCTGTACTTGAACAAATTTCTTACATGGCTCGGCAGCTGAACAGTCCAAGGCAGCAAAAACTCCT
TGATTTTGGAAAGCAGCTGCTGGCTGATCAAAAGCAGGCTACGGGATTAGCTGCCCAAAAACACTTGGCAGACAGCCAAA
GTTCGAGTGCTGCCGGCGGTGCTAAGTATCAAGAGATTGTGGATAAATTTATTACAGATGAAATAAAACATCAGGATAAT
ATTCATTTAGACAATATTAAAAAAGCCAAGGATCTCTACCAAGCCTTGGGACATAGCTATAAATCTATCGTGCTTTATGG
TGAGGTCTCGGCTGGTACCGGTGTCTGGGTTGGCCATGAAAAACAGGAAACCATTAAGTACCCAGCACCTATTCCTAAAC
ATGATATTGCTCTCAGGGTAAACGGCAACAGTATGGAACCTCTGTTTTATAACGGTGAAGTCATCTTTGTAAAGAAAACA
CAGGAAATTTACCACGGTCAATTTATCGTTGTCATTGTCAACAATGAAGCTTATCTCAAAAAACTATACAAAAAAGACCA
TGAGATCAGGCTGATTTCGATTAATCCCCATTATGACGATATTATTTTGCAAGAAGATGACGACATAGAAATTATCGGCA
CTGTTATTAGCTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(21-70)

Peptidase S24-like (Peptidase_S24)

(185-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

66.667

100

0.667

Multiple sequence alignment