Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HGK49_RS02910 Genome accession   NZ_CP051434
Coordinates   580908..581801 (-) Length   297 a.a.
NCBI ID   WP_202133217.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 575908..586801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK49_RS02885 (HGK49_02890) mobA 576188..576793 (-) 606 WP_202133214.1 molybdenum cofactor guanylyltransferase MobA -
  HGK49_RS02890 (HGK49_02895) moaA 576879..577844 (+) 966 WP_202133215.1 GTP 3',8-cyclase MoaA -
  HGK49_RS07890 - 578093..579480 (+) 1388 Protein_576 hypothetical protein -
  HGK49_RS02900 (HGK49_02910) - 579625..580530 (+) 906 WP_237388920.1 glycine zipper family protein -
  HGK49_RS02905 (HGK49_02915) - 580588..580899 (+) 312 WP_202133216.1 YkgJ family cysteine cluster protein -
  HGK49_RS02910 (HGK49_02920) pilA 580908..581801 (-) 894 WP_202133217.1 signal recognition particle-docking protein FtsY Machinery gene
  HGK49_RS02915 (HGK49_02925) - 581808..582365 (-) 558 WP_202133218.1 hypothetical protein -
  HGK49_RS02920 (HGK49_02930) - 582463..583137 (+) 675 WP_202133403.1 5-formyltetrahydrofolate cyclo-ligase -
  HGK49_RS02925 (HGK49_02935) rny 583115..584626 (+) 1512 WP_237388940.1 ribonuclease Y -
  HGK49_RS02930 (HGK49_02940) - 584627..585943 (-) 1317 WP_267462343.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33082.39 Da        Isoelectric Point: 6.9871

>NTDB_id=383601 HGK49_RS02910 WP_202133217.1 580908..581801(-) (pilA) [Helicobacter pylori strain ASHA-004]
MFNFFKKIVNKIKGEEVKEEAKEKKRQSVPKEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYYDK
TRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKVLLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSL
AYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV
IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 894 bp        

>NTDB_id=383601 HGK49_RS02910 WP_202133217.1 580908..581801(-) (pilA) [Helicobacter pylori strain ASHA-004]
ATGTTTAATTTTTTCAAAAAAATTGTCAATAAAATTAAGGGTGAAGAGGTTAAAGAAGAGGCTAAAGAGAAAAAGCGCCA
AAGCGTTCCTAAAGAGGAATTAGAAGAAATTTTGATTGGCTTTGACATCCAATACGATTTGATAGAAAGCTTGTTAAATC
ATTTAGGCGATTTAATCACGCCCAAGCAATTAGAAGTCGCTTTGTTGCGTTTCGTGCGTGGGGAAAGCTATTATGATAAA
ACACGCCTAAAAACTATCACCACAAAACCCTTAGTGCACTTAATCGTGGGGGTTAATGGGGCGGGCAAGACTACAACGAT
CGCTAAACTCGCCAAGCTCTCTTTAAAACAGCATAAAAAAGTACTTTTAGGGGCAGGCGATACCTTTAGAGCGGCCGCAG
TCAAACAGCTCCAGTTATGGGGCGAAAAGCTTAACATTCAAGTCATTAGCGCTAAAGAAGGGAGCGATCCAAGCTCTCTA
GCTTATAACACCATAGAAAGCGCGATCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCCGGGAGGTTACACAACCA
GACCAACCTTAAAAACGAGCTTTCTAAAATCGCGCGCACCTGCTCTAAAGTCTTAAAAGACGCCCCCTTTTATAAATTCC
TTATTTTAGACGGCACGCAAGGGAGTTCTGGGCTCACTCAAGCCAAGATTTTCCATGAGACTTTGGCGTTAGACGGCGTG
ATTATGACTAAGCTTGATGGCACTTCTAAAGGCGGAGCGATTTTAAGCGTGCTGTATGAGTTGAAATTACCCATTCTTTA
TTTAGGAATGGGCGAAAAAGAAGACGATTTGATCGCTTTTGATGAAGAACGCTTTATAGAAGACTTGGTTGATGCGGTGT
TTGTAGAACAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(91-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.824

89.899

0.367

Multiple sequence alignment