Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnK   Type   Regulator
Locus tag   FY406_RS09245 Genome accession   NZ_CP043405
Coordinates   1853816..1855126 (-) Length   436 a.a.
NCBI ID   WP_003088462.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1848816..1860126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS09215 (FY406_09215) - 1849026..1850339 (-) 1314 WP_003088449.1 RsmF rRNA methyltransferase first C-terminal domain-containing protein -
  FY406_RS09220 (FY406_09220) - 1850393..1851151 (-) 759 WP_003088451.1 inositol monophosphatase family protein -
  FY406_RS09225 (FY406_09225) - 1851141..1851419 (-) 279 WP_003088453.1 UPF0223 family protein -
  FY406_RS09230 (FY406_09230) - 1851412..1851825 (-) 414 WP_003088455.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  FY406_RS09235 (FY406_09235) - 1851882..1852802 (-) 921 WP_003088457.1 bifunctional riboflavin kinase/FAD synthetase -
  FY406_RS09240 (FY406_09240) truB 1852830..1853711 (-) 882 WP_003088460.1 tRNA pseudouridine(55) synthase TruB -
  FY406_RS09245 (FY406_09245) scnK 1853816..1855126 (-) 1311 WP_003088462.1 sensor histidine kinase KdpD Regulator
  FY406_RS09250 (FY406_09250) scnR 1855127..1855816 (-) 690 WP_003088464.1 response regulator transcription factor Regulator
  FY406_RS09255 (FY406_09255) - 1855962..1856873 (+) 912 WP_003088467.1 ABC transporter ATP-binding protein -
  FY406_RS09260 (FY406_09260) - 1856883..1857635 (+) 753 WP_003088478.1 ABC transporter permease -
  FY406_RS09265 (FY406_09265) - 1857637..1858374 (+) 738 WP_003088480.1 ABC transporter permease -
  FY406_RS10555 (FY406_09270) - 1858425..1858900 (+) 476 Protein_1779 hypothetical protein -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49846.57 Da        Isoelectric Point: 9.2667

>NTDB_id=383600 FY406_RS09245 WP_003088462.1 1853816..1855126(-) (scnK) [Streptococcus ratti strain ATCC 31377]
MTTFKYFSKVLLTYFATVVLLGLTAIFIFLFGSYHIIDSMQNSHEEPTAIVKTMVSHSQLQLTTQNKKVLDKQKIWLMLL
SEQGNIEQSYRLPDKLKRHYSMADVARSSRWYLDDYPVFTFVVGEKVLILGYPKGSFEKYPANYYNVQNFFSIAKLVAGI
FVGLIIALLAIYLRSQMRLRKEFKPITQALADLSDSRPVVLNEKGNLSEIKSALNQTSQFLIETKEMRSHWIRGISHDLR
NPLTLMLGYTSQLETLQGRSHQTQQIEANIHKMEDIISNLNMSYLLENQDIEQEMTSFDLNGLLRQIIADLYNNYEGIDL
SFKLPEEATPVLGNKTLLTRAINNILLNSLTHNTSPQLKLNLQQVGDHAQLIITDNGSISAKKVQELNQKSRNYDTHGMG
TVITKQIIKLHKGETIFWDNHPGLKVTVVLPLTDKF

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=383600 FY406_RS09245 WP_003088462.1 1853816..1855126(-) (scnK) [Streptococcus ratti strain ATCC 31377]
ATGACGACTTTTAAGTATTTTTCTAAGGTTTTGCTGACCTATTTTGCGACAGTGGTTCTTCTGGGGCTGACTGCCATTTT
TATCTTTTTATTTGGTAGCTATCACATCATTGATAGCATGCAAAACAGTCATGAAGAGCCGACAGCTATCGTCAAAACAA
TGGTCAGTCATAGCCAGTTACAGCTAACCACTCAGAATAAGAAAGTTCTAGACAAGCAAAAAATCTGGCTTATGCTATTG
TCAGAGCAAGGGAACATTGAACAATCCTACCGCTTACCAGACAAGCTTAAGCGCCACTACAGCATGGCAGATGTGGCTCG
TTCGTCACGCTGGTATTTGGACGATTATCCTGTTTTTACCTTTGTCGTTGGTGAAAAAGTTCTCATCTTAGGCTATCCCA
AGGGGTCTTTTGAAAAATATCCTGCCAACTACTACAACGTCCAAAATTTCTTTAGCATCGCAAAGCTGGTTGCAGGTATT
TTTGTGGGACTGATCATAGCCTTATTGGCTATTTATCTACGGTCGCAAATGAGGCTGCGTAAGGAATTCAAACCAATCAC
TCAAGCTCTTGCTGATTTGTCTGACAGCCGACCTGTTGTCCTTAATGAAAAAGGCAACCTGTCTGAAATCAAGTCCGCTC
TTAATCAGACCTCGCAGTTCTTGATTGAAACCAAGGAAATGCGCAGCCATTGGATACGCGGTATCAGTCACGATCTGCGC
AACCCTCTGACCCTCATGCTCGGTTACACCAGCCAGCTTGAAACTCTGCAAGGCCGCAGTCATCAAACTCAGCAAATCGA
AGCTAATATTCATAAAATGGAGGACATCATCTCCAACCTTAATATGAGCTATCTGCTGGAGAATCAAGATATTGAGCAGG
AAATGACCAGTTTTGACCTTAATGGTCTCCTCAGACAAATCATAGCTGATCTCTACAATAACTATGAAGGGATTGATTTG
AGTTTTAAACTGCCAGAAGAAGCAACTCCTGTTTTGGGTAATAAAACGCTGCTGACACGCGCCATCAACAATATTCTTCT
CAACAGCCTAACGCACAATACCTCGCCACAACTGAAACTCAACTTACAACAGGTTGGAGACCACGCGCAGCTGATAATCA
CAGACAATGGTTCTATTAGTGCTAAAAAAGTCCAAGAGCTCAATCAAAAATCCCGCAATTATGATACACATGGCATGGGT
ACAGTTATCACTAAGCAAATTATTAAACTTCATAAGGGTGAGACTATCTTTTGGGACAATCATCCAGGTCTGAAAGTGAC
AGTTGTTTTACCTTTAACAGATAAATTTTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(228-281)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(335-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

48.874

100

0.498

Multiple sequence alignment