Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   FY406_RS05355 Genome accession   NZ_CP043405
Coordinates   1081869..1082594 (+) Length   241 a.a.
NCBI ID   WP_003086324.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076869..1087594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS05325 (FY406_05325) - 1077198..1078628 (+) 1431 WP_003086315.1 NCS2 family permease -
  FY406_RS05330 (FY406_05330) tsaE 1078804..1079247 (+) 444 WP_003086317.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FY406_RS05335 (FY406_05335) - 1079240..1079761 (+) 522 WP_003086318.1 GNAT family N-acetyltransferase -
  FY406_RS05340 (FY406_05340) brpA 1079772..1081028 (+) 1257 WP_003086319.1 biofilm formation/cell division transcriptional regulator BrpA -
  FY406_RS05345 (FY406_05345) - 1081095..1081388 (-) 294 WP_003086321.1 hypothetical protein -
  FY406_RS05350 (FY406_05350) - 1081385..1081804 (-) 420 WP_003086323.1 HIT family protein -
  FY406_RS05355 (FY406_05355) pptA 1081869..1082594 (+) 726 WP_003086324.1 ABC transporter ATP-binding protein Regulator
  FY406_RS05360 (FY406_05360) - 1082598..1083632 (+) 1035 WP_003086326.1 ABC transporter permease -
  FY406_RS05365 (FY406_05365) ccrZ 1083691..1084473 (+) 783 WP_003086328.1 cell cycle regulator CcrZ -
  FY406_RS05370 (FY406_05370) trmB 1084483..1085118 (+) 636 WP_003086330.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FY406_RS05380 (FY406_05380) - 1085327..1085584 (+) 258 WP_003086332.1 hypothetical protein -
  FY406_RS05385 (FY406_05385) rimP 1085641..1086168 (+) 528 WP_003086334.1 ribosome maturation factor RimP -
  FY406_RS05390 (FY406_05390) nusA 1086203..1087396 (+) 1194 WP_003086336.1 transcription termination factor NusA -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26763.99 Da        Isoelectric Point: 4.6310

>NTDB_id=383583 FY406_RS05355 WP_003086324.1 1081869..1082594(+) (pptA) [Streptococcus ratti strain ATCC 31377]
MLKIENLTGGYVNIPVLKNISFQVDDGELVGLIGLNGAGKSTTINEIIGLLTPYEGKISIDGLTLSEQEEAYRKKIGFIP
ETPSLYEELTLKEHLETIAMAYDIEQAEAMNRAQKLLELFRLEDKLDWFPSHFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPVAISDLTELLAAEKAKGKSILMSTHVLDSAEKMCDRFVILHAGQIRAQGRLDDLRANFGSPQTSLNDIYMALTKE
A

Nucleotide


Download         Length: 726 bp        

>NTDB_id=383583 FY406_RS05355 WP_003086324.1 1081869..1082594(+) (pptA) [Streptococcus ratti strain ATCC 31377]
ATGTTAAAAATAGAAAATCTGACAGGCGGTTATGTCAATATCCCTGTCCTAAAAAATATCAGTTTCCAAGTAGACGACGG
CGAATTAGTCGGTCTTATCGGACTCAATGGTGCCGGCAAATCGACGACTATTAATGAAATTATCGGACTTCTGACCCCTT
ATGAGGGAAAGATTAGTATTGATGGACTGACCCTGTCCGAACAGGAGGAGGCTTACCGCAAGAAAATCGGTTTTATCCCT
GAGACCCCCAGTCTTTACGAGGAATTAACTCTGAAAGAGCATCTTGAAACCATAGCTATGGCCTATGATATTGAGCAGGC
AGAAGCAATGAACCGTGCTCAAAAACTTTTGGAGCTGTTTAGACTGGAAGATAAGCTTGATTGGTTTCCCAGCCATTTTT
CTAAAGGTATGAAACAAAAAGTGATGATTATCTGTGCCTTTATTGTTAATCCTAGTCTTTTTATTGTGGATGAACCTTTT
TTGGGGCTGGATCCTGTGGCTATCTCAGATTTAACAGAACTTTTGGCGGCTGAAAAAGCTAAGGGGAAGTCTATTTTGAT
GTCCACTCATGTTCTTGATTCGGCAGAAAAAATGTGCGATCGCTTTGTTATTTTGCATGCCGGACAAATCAGAGCTCAAG
GCAGGCTGGATGATTTACGGGCAAATTTCGGCAGTCCTCAGACCAGTCTCAATGACATTTATATGGCTTTGACCAAAGAG
GCTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

77.406

99.17

0.768
  pptA Streptococcus salivarius strain HSISS4

76.987

99.17

0.763

Multiple sequence alignment