Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FY406_RS01545 Genome accession   NZ_CP043405
Coordinates   324687..326087 (-) Length   466 a.a.
NCBI ID   WP_003089583.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 319687..331087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS01520 (FY406_01520) - 320287..320829 (-) 543 WP_003089575.1 hypothetical protein -
  FY406_RS01525 (FY406_01525) - 320898..321422 (-) 525 WP_003089576.1 transcription repressor NadR -
  FY406_RS01530 (FY406_01530) gltX 321628..323085 (-) 1458 WP_003089578.1 glutamate--tRNA ligase -
  FY406_RS01535 (FY406_01535) - 323288..324001 (-) 714 WP_003089580.1 TIGR00266 family protein -
  FY406_RS01540 (FY406_01540) - 324102..324596 (-) 495 WP_003089581.1 carbonic anhydrase -
  FY406_RS01545 (FY406_01545) radA 324687..326087 (-) 1401 WP_003089583.1 DNA repair protein RadA Machinery gene
  FY406_RS01550 (FY406_01550) - 326045..326512 (-) 468 WP_003089585.1 cysteine hydrolase family protein -
  FY406_RS01555 (FY406_01555) - 326521..326964 (-) 444 WP_003089588.1 dUTP diphosphatase -
  FY406_RS01560 (FY406_01560) - 327212..328228 (+) 1017 WP_037611194.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  FY406_RS01565 (FY406_01565) galU 328233..329153 (+) 921 WP_003089591.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FY406_RS01570 (FY406_01570) - 329180..329851 (-) 672 WP_003089592.1 rhomboid family intramembrane serine protease -
  FY406_RS01575 (FY406_01575) - 329838..330374 (-) 537 WP_003089593.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51069.68 Da        Isoelectric Point: 7.9355

>NTDB_id=383547 FY406_RS01545 WP_003089583.1 324687..326087(-) (radA) [Streptococcus ratti strain ATCC 31377]
MAVRWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVAEVKNARISLTGEKTRPVKLNQVTSSQV
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANQGTVLYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGFLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRINEAGKLGFTKIFVPKNALSGLTAPKGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=383547 FY406_RS01545 WP_003089583.1 324687..326087(-) (radA) [Streptococcus ratti strain ATCC 31377]
ATGGCGGTCCGCTGGAATAGCAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACCTTTGTCTGTCAGGAGTGCGG
CTACAATTCGCCTAAATATTTAGGCCGCTGTCCAAACTGCAGCAGCTGGTCTTCCTTTGTTGAAGAAGTTGAAGTTGCGG
AAGTCAAAAATGCACGGATTTCGCTGACAGGTGAGAAAACACGGCCAGTTAAATTAAATCAAGTTACCTCTAGTCAGGTC
ACTAGAGTCAAGACGAATATGGAAGAGTTTAACCGTGTTTTGGGCGGCGGTGTTGTGCCGGGCAGCCTTGTGCTTATCGG
AGGGGATCCAGGAATTGGAAAATCTACTCTCCTTTTACAAGTATCAACTCAACTGGCTAACCAAGGGACAGTCCTCTATG
TGTCTGGTGAAGAATCGGCTGAGCAGATAAAACTGCGCAGTGAACGCTTGGGGGATATTGACAATGAGTTTTACCTCTAT
GCCGAGACCAACATGCAGAGTATTCGTGCTGAGATTGAAAAAATTCAGCCTGATTTTTTAATTATTGATTCCATTCAAAC
GGTTATGAGTCCTGAAATTTCCAGCGTTCAAGGTTCTGTTTCGCAGGTACGTGAGGTGACAGCAGAGCTAATGCAGCTGG
CTAAGACCAATAATATTGCGACTTTTATTGTTGGACATGTGACCAAAGAAGGAACTTTAGCAGGGCCTCGTATGCTTGAA
CACATGGTGGATACTGTGCTCTACTTTGAAGGTGAGCGGCAGCATACTTTTCGGATTTTGCGAGCTGTAAAAAATCGTTT
TGGCTCGACTAATGAGATTGGCATTTTTGAAATGCGCTCAGCTGGGCTGGTTGAGGTTTTGAATCCCAGCCAAGTCTTTT
TGGAAGAGCGTCTGGATGGCGCAACAGGATCAGCCATTGTGGTTACGATGGAAGGCACACGGCCTATTTTAGCGGAGGTA
CAAGCCTTAGTCACACCGACTGTTTTTGGCAATGCCAAGCGGACGACTACGGGTCTGGACTTTAATCGCGTCAGCCTGAT
TATGGCAGTGTTGGAGAAGCGCTGCGGCTTTTTGCTGCAAAATCAAGATGCCTATCTCAAATCTGCTGGCGGTGTGCGCT
TGGATGAGCCTGCTATTGATTTAGCCGTTGCGGTCGCTATTGCTTCCAGTTATAAGGAAAAACCGACCAATCCTCAAGAA
TGTTATATTGGAGAAATTGGTTTAACAGGCGAAATCCGCCGTGTTAATCGGATTGAACAGCGGATTAATGAAGCCGGGAA
ACTCGGCTTCACCAAGATTTTTGTACCTAAAAATGCTCTATCTGGGCTAACCGCTCCAAAAGGAATTCAGGTAATCGGTG
TGACGACGGTTGGCGAAGTTTTAAAAAAGGTCTTCAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(373-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)

AAA domain (AAA_25)

(77-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.183

97.21

0.867
  radA Streptococcus pneumoniae D39

89.183

97.21

0.867
  radA Streptococcus pneumoniae R6

89.183

97.21

0.867
  radA Streptococcus pneumoniae TIGR4

89.183

97.21

0.867
  radA Streptococcus mitis SK321

88.962

97.21

0.865
  radA Streptococcus mitis NCTC 12261

88.962

97.21

0.865
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

97.21

0.605

Multiple sequence alignment