Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FY406_RS00610 Genome accession   NZ_CP043405
Coordinates   134457..136259 (-) Length   600 a.a.
NCBI ID   WP_003089174.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 129457..141259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS00590 (FY406_00590) - 131075..131572 (-) 498 WP_003089165.1 LURP-one-related/scramblase family protein -
  FY406_RS00595 (FY406_00595) prsA 131809..132804 (-) 996 WP_003089169.1 peptidylprolyl isomerase PrsA -
  FY406_RS00600 (FY406_00600) - 132866..133573 (-) 708 WP_003089171.1 O-methyltransferase -
  FY406_RS00605 (FY406_00605) - 133656..134273 (-) 618 WP_003089173.1 HAD-IA family hydrolase -
  FY406_RS00610 (FY406_00610) pepF 134457..136259 (-) 1803 WP_003089174.1 oligoendopeptidase F Regulator
  FY406_RS00615 (FY406_00615) - 136337..137329 (-) 993 WP_003089179.1 competence protein CoiA -
  FY406_RS00620 (FY406_00620) - 137631..138188 (-) 558 WP_003089181.1 TetR/AcrR family transcriptional regulator -
  FY406_RS00625 (FY406_00625) - 138312..139424 (+) 1113 WP_003089184.1 alpha/beta fold hydrolase -
  FY406_RS00630 (FY406_00630) nagB 139796..140497 (-) 702 WP_003089185.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69523.14 Da        Isoelectric Point: 5.4191

>NTDB_id=383543 FY406_RS00610 WP_003089174.1 134457..136259(-) (pepF) [Streptococcus ratti strain ATCC 31377]
MSNNRDHIEEKYQWDLTTIFAKDRDWEKEEEALGADLKKVKTAAGHLLDSGQNLLEITNQYLALSRRLEKLYVYASMKND
QDTTVAKYQEFQAKAISLAAKFNQTFAFYEPEFMQLSKENYQHFLAECPQLTAYSHFFEKLFQQKEHVLSHKEEELLAAA
GEIFGSAGETFEILDNADIVFPTVLDDQNQEVELTHGNFITLMESKDRTVRKAAYQAYYSVYEQFQHTYAKTLETNVKVH
NFQAKTRKYKSAREAALADNFIPESVYDTLLQAVNKHLPLLRRYVKLRQKILGLADLKMYDIYTPLSKTDMSFTYDQALK
KAQEVLAVFGKDYAERVHRVFTERWIDVQVNKGKRSGAYSGGSYDTNAFILLNWQDTLDNLFTLVHETGHSLHSVFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLQEVTDDKERFAILNHYLDGFKGTVFRQSQFAEFEQLIHQTAQAGEVLTSDY
LSSLYADLNEKYYGLAKKDNPEIQYEWARIPHFYYNFYVYQYATGFAAASYLAHKIVYGSQEDKDKYLSYLKAGNSDYPL
KIIAKAGVDMTKGDYLDAAFQVFEERLTELEKLVEKGLYK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=383543 FY406_RS00610 WP_003089174.1 134457..136259(-) (pepF) [Streptococcus ratti strain ATCC 31377]
ATGTCTAACAACCGTGATCATATTGAAGAAAAATATCAGTGGGATTTGACCACCATTTTTGCAAAGGACAGGGATTGGGA
AAAAGAAGAAGAGGCGCTTGGCGCAGATTTAAAAAAGGTGAAAACTGCTGCTGGTCATCTTTTGGATTCAGGGCAAAATC
TCTTAGAAATTACTAATCAGTACTTGGCTTTAAGCCGCCGTCTGGAAAAACTTTATGTTTATGCTTCTATGAAGAATGAC
CAAGACACAACAGTCGCCAAATATCAAGAATTTCAGGCTAAAGCAATAAGTCTGGCGGCTAAATTTAATCAGACCTTTGC
CTTTTATGAGCCTGAATTTATGCAGCTGTCTAAAGAAAATTATCAGCATTTTTTAGCAGAATGTCCTCAATTGACAGCTT
ACAGTCATTTCTTTGAAAAATTGTTTCAGCAAAAGGAACATGTCCTGTCTCATAAAGAAGAAGAGCTGCTAGCTGCTGCG
GGTGAAATTTTTGGATCGGCCGGTGAAACCTTTGAGATTCTGGATAATGCAGATATTGTCTTTCCGACAGTTTTGGACGA
TCAGAATCAGGAAGTTGAGCTGACGCACGGCAATTTTATTACCTTGATGGAATCTAAAGACCGCACAGTCAGAAAGGCTG
CTTACCAAGCTTATTATAGTGTCTATGAACAATTTCAGCACACCTATGCTAAGACCTTAGAGACCAATGTTAAGGTTCAT
AATTTTCAGGCCAAGACAAGAAAATATAAAAGTGCGCGTGAGGCAGCACTGGCTGATAATTTTATTCCAGAGAGTGTCTA
TGACACTTTGCTGCAAGCTGTTAATAAGCATCTTCCCTTGCTTAGGCGCTATGTTAAACTTCGTCAGAAGATTTTGGGAC
TTGCTGATCTTAAGATGTATGATATCTATACGCCTTTATCAAAGACAGATATGAGTTTTACCTATGATCAAGCCTTAAAA
AAGGCTCAAGAAGTGCTGGCAGTTTTTGGTAAAGATTATGCAGAGCGCGTGCACCGTGTCTTTACAGAACGCTGGATTGA
TGTTCAGGTCAATAAAGGCAAACGCTCAGGTGCTTATTCAGGCGGCTCTTACGACACAAATGCTTTTATCCTGCTCAACT
GGCAGGATACGCTGGACAATTTGTTTACGCTTGTTCATGAAACAGGGCATTCGCTGCACTCAGTCTTTACCCGCGAAAAT
CAGCCTTATGTCTATGGAGATTATTCTATTTTTCTGGCTGAGATTGCCTCAACCACCAATGAAAACATTTTGACAGAGAC
GCTTTTACAAGAGGTGACAGATGATAAAGAGCGTTTCGCCATTCTCAACCATTACCTTGATGGTTTCAAGGGAACGGTCT
TTCGGCAAAGCCAATTTGCTGAGTTTGAACAGCTGATTCACCAGACAGCCCAAGCAGGTGAGGTGCTGACCAGCGATTAT
CTGAGCAGTCTTTATGCTGATTTAAATGAAAAATATTACGGCTTGGCAAAAAAAGACAATCCAGAAATTCAGTATGAGTG
GGCCAGAATACCGCATTTTTACTATAATTTTTACGTTTATCAGTATGCGACTGGTTTTGCTGCTGCCAGCTATCTTGCTC
ATAAGATTGTGTACGGCAGTCAGGAGGATAAGGATAAGTATCTTAGTTATCTCAAGGCGGGAAACTCAGACTATCCGCTT
AAGATCATTGCCAAAGCAGGTGTTGACATGACCAAGGGAGATTATCTGGATGCGGCTTTTCAGGTTTTTGAAGAGCGACT
GACCGAGCTGGAAAAATTAGTTGAAAAAGGCCTGTACAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.117

99.833

0.7

Multiple sequence alignment