Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FX981_RS18935 Genome accession   NZ_CP043404
Coordinates   3734220..3735122 (-) Length   300 a.a.
NCBI ID   WP_025092576.1    Uniprot ID   A0A5C0WNT3
Organism   Bacillus safensis strain PgKB20     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3729220..3740122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX981_RS18920 (FX981_03800) xerC 3729596..3730513 (-) 918 WP_024424182.1 tyrosine recombinase XerC -
  FX981_RS18925 (FX981_03801) trmFO 3730576..3731880 (-) 1305 WP_149126666.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FX981_RS18930 (FX981_03802) topA 3731951..3734026 (-) 2076 WP_024424184.1 type I DNA topoisomerase -
  FX981_RS18935 (FX981_03803) dprA 3734220..3735122 (-) 903 WP_025092576.1 DNA-processing protein DprA Machinery gene
  FX981_RS18940 (FX981_03804) sucD 3735186..3736088 (-) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  FX981_RS18945 (FX981_03805) sucC 3736111..3737271 (-) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  FX981_RS18950 (FX981_03806) - 3737448..3737723 (-) 276 WP_149126667.1 FlhB-like flagellar biosynthesis protein -
  FX981_RS18955 (FX981_03807) - 3737720..3739456 (-) 1737 WP_149126668.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34070.43 Da        Isoelectric Point: 8.8768

>NTDB_id=383536 FX981_RS18935 WP_025092576.1 3734220..3735122(-) (dprA) [Bacillus safensis strain PgKB20]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHVYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFHSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=383536 FX981_RS18935 WP_025092576.1 3734220..3735122(-) (dprA) [Bacillus safensis strain PgKB20]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAACTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGAGTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTGGCACAT
AAAGAGTGCATCAGGAAAAAAGGGAAAACAATCGGCATTATAGCAGGCGGCTTTCAGCATGTATACCCAAAAGAACATGC
GCAAATGGCTCAATACATGGGTGAACATCATTTGCTTTTGTCAGAGCACCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCTGGATCCATCTTTGATTCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCACAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WNT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Legionella pneumophila strain ERS1305867

37.705

100

0.383

Multiple sequence alignment