Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FX981_RS18905 Genome accession   NZ_CP043404
Coordinates   3726805..3727584 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain PgKB20     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3721805..3732584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX981_RS18875 (FX981_03791) fliH 3721919..3722683 (-) 765 WP_149126664.1 flagellar assembly protein FliH -
  FX981_RS18880 (FX981_03792) fliG 3722676..3723692 (-) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  FX981_RS18885 (FX981_03793) fliF 3723704..3725296 (-) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  FX981_RS18890 (FX981_03794) fliE 3725346..3725663 (-) 318 WP_025092577.1 flagellar hook-basal body complex protein FliE -
  FX981_RS18895 (FX981_03795) flgC 3725675..3726127 (-) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  FX981_RS18900 (FX981_03796) flgB 3726127..3726516 (-) 390 WP_187470531.1 flagellar basal body rod protein FlgB -
  FX981_RS18905 (FX981_03797) codY 3726805..3727584 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FX981_RS18910 (FX981_03798) hslU 3727619..3729019 (-) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  FX981_RS18915 (FX981_03799) hslV 3729036..3729581 (-) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  FX981_RS18920 (FX981_03800) xerC 3729596..3730513 (-) 918 WP_024424182.1 tyrosine recombinase XerC -
  FX981_RS18925 (FX981_03801) trmFO 3730576..3731880 (-) 1305 WP_149126666.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=383535 FX981_RS18905 WP_007499612.1 3726805..3727584(-) (codY) [Bacillus safensis strain PgKB20]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=383535 FX981_RS18905 WP_007499612.1 3726805..3727584(-) (codY) [Bacillus safensis strain PgKB20]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTTCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment