Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FX981_RS16535 Genome accession   NZ_CP043404
Coordinates   3247893..3248528 (-) Length   211 a.a.
NCBI ID   WP_024428112.1    Uniprot ID   A0A5C0WK87
Organism   Bacillus safensis strain PgKB20     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3242893..3253528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX981_RS16515 (FX981_03317) - 3243229..3243933 (+) 705 WP_024422777.1 DnaD domain-containing protein -
  FX981_RS16520 (FX981_03318) nth 3243951..3244613 (+) 663 WP_024422776.1 endonuclease III -
  FX981_RS16525 (FX981_03319) - 3244610..3245119 (+) 510 WP_025093074.1 YpoC family protein -
  FX981_RS16530 (FX981_03320) - 3245156..3247873 (-) 2718 WP_056767113.1 PBP1A family penicillin-binding protein -
  FX981_RS16535 (FX981_03321) recU 3247893..3248528 (-) 636 WP_024428112.1 Holliday junction resolvase RecU Machinery gene
  FX981_RS16540 (FX981_03322) - 3248575..3249531 (+) 957 WP_056767111.1 DUF2515 domain-containing protein -
  FX981_RS16545 (FX981_03323) sspM 3249556..3249660 (-) 105 WP_024422772.1 acid-soluble spore protein SspM -
  FX981_RS16550 (FX981_03324) - 3249858..3250091 (+) 234 WP_223251001.1 DUF5446 family protein -
  FX981_RS16555 (FX981_03325) - 3250141..3250521 (+) 381 WP_244948484.1 YppE family protein -
  FX981_RS16560 (FX981_03326) - 3250630..3251091 (+) 462 WP_024422769.1 YppG family protein -
  FX981_RS16565 (FX981_03327) - 3251111..3251530 (-) 420 WP_056767106.1 Hsp20/alpha crystallin family protein -
  FX981_RS16570 (FX981_03328) - 3251700..3252206 (+) 507 WP_024422767.1 PTS sugar transporter subunit IIA -
  FX981_RS16575 (FX981_03329) - 3252261..3253379 (-) 1119 WP_024428115.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24317.64 Da        Isoelectric Point: 9.7224

>NTDB_id=383531 FX981_RS16535 WP_024428112.1 3247893..3248528(-) (recU) [Bacillus safensis strain PgKB20]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFYFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESNQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=383531 FX981_RS16535 WP_024428112.1 3247893..3248528(-) (recU) [Bacillus safensis strain PgKB20]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTACCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTGTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTACTTCTGGGAGCGGCAGAAG
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAATCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WK87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.762

95.735

0.706

Multiple sequence alignment