Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FX981_RS00600 Genome accession   NZ_CP043404
Coordinates   116206..116484 (-) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain PgKB20     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 111206..121484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX981_RS00580 (FX981_00113) ade 111213..112940 (-) 1728 WP_034623311.1 adenine deaminase -
  FX981_RS00585 (FX981_00114) - 113203..113871 (-) 669 WP_008345123.1 potassium channel family protein -
  FX981_RS00590 (FX981_00115) - 113909..114745 (-) 837 WP_149125688.1 gamma-glutamylcyclotransferase -
  FX981_RS00595 (FX981_00116) - 114750..116060 (-) 1311 WP_024426886.1 ATP-binding protein -
  FX981_RS00600 (FX981_00117) abrB 116206..116484 (-) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FX981_RS00605 (FX981_00118) mreBH 116761..117768 (+) 1008 WP_024424745.1 rod-share determining protein MreBH -
  FX981_RS19200 (FX981_00119) - 117843..117974 (+) 132 WP_003210922.1 protein YkpC -
  FX981_RS00610 (FX981_00120) - 118081..119313 (+) 1233 WP_024426885.1 aminopeptidase -
  FX981_RS00615 (FX981_00121) - 119352..120971 (-) 1620 WP_024426884.1 ABC-F family ATP-binding cassette domain-containing protein -
  FX981_RS00620 (FX981_00122) - 121115..121390 (+) 276 WP_024424743.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=383477 FX981_RS00600 WP_024424746.1 116206..116484(-) (abrB) [Bacillus safensis strain PgKB20]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=383477 FX981_RS00600 WP_024424746.1 116206..116484(-) (abrB) [Bacillus safensis strain PgKB20]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAACCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543

Multiple sequence alignment