Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FZC56_RS05310 Genome accession   NZ_CP043401
Coordinates   1121446..1122051 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS259     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116446..1127051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZC56_RS05290 - 1116841..1118601 (-) 1761 WP_000156453.1 Lon protease family protein -
  FZC56_RS05295 matP 1118787..1119239 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  FZC56_RS05300 ompA 1119311..1120363 (-) 1053 WP_001674965.1 porin OmpA -
  FZC56_RS05305 sulA 1120720..1121229 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  FZC56_RS05310 sxy/tfoX 1121446..1122051 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  FZC56_RS05315 yccS 1122038..1124191 (-) 2154 WP_000950880.1 YccS family putative transporter -
  FZC56_RS05320 - 1124210..1124656 (-) 447 WP_001261222.1 YccF domain-containing protein -
  FZC56_RS05325 helD 1124780..1126834 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=383415 FZC56_RS05310 WP_001202375.1 1121446..1122051(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS259]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=383415 FZC56_RS05310 WP_001202375.1 1121446..1122051(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS259]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment