Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HGG68_RS14965 Genome accession   NZ_CP051263
Coordinates   3107641..3108156 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli CFT073     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3102641..3113156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGG68_RS14945 emrA 3102801..3103973 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HGG68_RS14950 emrB 3103990..3105528 (+) 1539 WP_001305258.1 multidrug efflux MFS transporter permease subunit EmrB -
  HGG68_RS14955 - 3105786..3106483 (+) 698 Protein_2977 RNA ligase family protein -
  HGG68_RS14960 - 3106480..3107592 (+) 1113 WP_000638135.1 ATP-binding protein -
  HGG68_RS14965 luxS 3107641..3108156 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  HGG68_RS14970 gshA 3108306..3109862 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HGG68_RS14975 yqaA 3109935..3110363 (-) 429 WP_001287462.1 YqaA family protein -
  HGG68_RS14980 yqaB 3110360..3110926 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HGG68_RS15015 csrA 3112254..3112439 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=383404 HGG68_RS14965 WP_001130208.1 3107641..3108156(-) (luxS) [Escherichia coli CFT073]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=383404 HGG68_RS14965 WP_001130208.1 3107641..3108156(-) (luxS) [Escherichia coli CFT073]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACTTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment