Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HGG68_RS02630 Genome accession   NZ_CP051263
Coordinates   571971..572576 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli CFT073     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 566971..577576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGG68_RS25650 - 567525..567623 (+) 99 Protein_517 hypothetical protein -
  HGG68_RS02600 rsmS 567676..567837 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HGG68_RS02605 priC 567851..568378 (-) 528 WP_000858961.1 primosomal replication protein N'' -
  HGG68_RS02610 ybaN 568448..568825 (+) 378 WP_001188900.1 DUF454 family protein -
  HGG68_RS02615 apt 568978..569529 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HGG68_RS02620 dnaX 569658..571589 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  HGG68_RS02625 ybaB 571642..571971 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HGG68_RS02630 recR 571971..572576 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HGG68_RS02635 htpG 572686..574560 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  HGG68_RS02640 adk 574741..575385 (+) 645 WP_001313630.1 adenylate kinase -
  HGG68_RS02645 hemH 575517..576479 (+) 963 WP_001250114.1 ferrochelatase -
  HGG68_RS02650 aes 576476..577435 (-) 960 WP_000801819.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=383375 HGG68_RS02630 WP_001195025.1 571971..572576(+) (recR) [Escherichia coli CFT073]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=383375 HGG68_RS02630 WP_001195025.1 571971..572576(+) (recR) [Escherichia coli CFT073]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443