Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HF562_RS09350 Genome accession   NZ_CP051222
Coordinates   1939320..1940747 (-) Length   475 a.a.
NCBI ID   WP_001471732.1    Uniprot ID   -
Organism   Escherichia coli strain SCZE5     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1934320..1945747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF562_RS09315 (HF562_09325) hisL 1934904..1934954 (-) 51 WP_001364200.1 his operon leader peptide -
  HF562_RS09320 (HF562_09330) yefM 1935237..1935488 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HF562_RS09325 (HF562_09335) yoeB 1935485..1935739 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HF562_RS09330 (HF562_09340) yeeZ 1935822..1936646 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HF562_RS09335 (HF562_09345) yeeY 1936692..1937621 (+) 930 WP_000803374.1 LysR substrate-binding domain-containing protein -
  HF562_RS09340 (HF562_09350) yoeI 1937836..1937898 (+) 63 WP_010723108.1 membrane protein YoeI -
  HF562_RS09345 (HF562_09355) plaP 1937888..1939246 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HF562_RS09350 (HF562_09360) sbcB 1939320..1940747 (-) 1428 WP_001471732.1 exodeoxyribonuclease I Machinery gene
  HF562_RS09355 (HF562_09365) dacD 1940956..1942122 (+) 1167 WP_024201915.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HF562_RS09360 (HF562_09370) sbmC 1942241..1942714 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  HF562_RS09365 (HF562_09375) yeeA 1942912..1943970 (+) 1059 WP_001200890.1 FUSC family protein -
  HF562_RS09370 (HF562_09380) tmaR 1944142..1944471 (+) 330 WP_000450409.1 DUF496 family protein -
  HF562_RS09375 (HF562_09385) - 1944572..1944757 (-) 186 Protein_1852 EutP/PduV family microcompartment system protein -
  HF562_RS09380 (HF562_09390) - 1944808..1944954 (+) 147 Protein_1853 transposase domain-containing protein -
  HF562_RS09385 (HF562_09395) - 1945243..1945323 (-) 81 Protein_1854 hypothetical protein -
  HF562_RS09390 (HF562_09400) yeeW 1945369..1945563 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54497.81 Da        Isoelectric Point: 5.4700

>NTDB_id=383320 HF562_RS09350 WP_001471732.1 1939320..1940747(-) (sbcB) [Escherichia coli strain SCZE5]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQVYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=383320 HF562_RS09350 WP_001471732.1 1939320..1940747(-) (sbcB) [Escherichia coli strain SCZE5]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGTCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment