Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FY043_RS23485 Genome accession   NZ_CP043396
Coordinates   4929078..4930448 (-) Length   456 a.a.
NCBI ID   WP_060499986.1    Uniprot ID   A0A6G6V4S1
Organism   Pseudomonas monteilii strain 170620603RE     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4924078..4935448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY043_RS23465 (FY043_23905) - 4924360..4924557 (-) 198 WP_016713459.1 YbdD/YjiX family protein -
  FY043_RS23470 (FY043_23910) - 4924575..4926641 (-) 2067 WP_060499983.1 carbon starvation CstA family protein -
  FY043_RS23475 (FY043_23915) - 4926819..4927181 (+) 363 WP_060499984.1 PilZ domain-containing protein -
  FY043_RS23480 (FY043_23920) - 4927445..4928962 (+) 1518 WP_060499985.1 nucleobase:cation symporter-2 family protein -
  FY043_RS23485 (FY043_23925) radA 4929078..4930448 (-) 1371 WP_060499986.1 DNA repair protein RadA Machinery gene
  FY043_RS23490 (FY043_23930) mscL 4930624..4931043 (+) 420 WP_060499987.1 large-conductance mechanosensitive channel protein MscL -
  FY043_RS23495 (FY043_23935) - 4931124..4931900 (-) 777 WP_060499988.1 ferredoxin--NADP reductase -
  FY043_RS23500 (FY043_23940) - 4932114..4932821 (+) 708 WP_060499989.1 autoinducer binding domain-containing protein -
  FY043_RS23505 (FY043_23945) - 4932918..4934042 (+) 1125 WP_104833955.1 methyltransferase -
  FY043_RS23510 (FY043_23955) - 4934160..4934315 (-) 156 WP_016713451.1 DUF2474 domain-containing protein -
  FY043_RS23515 (FY043_23960) cydB 4934325..4935332 (-) 1008 WP_016713450.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48765.18 Da        Isoelectric Point: 6.8985

>NTDB_id=383315 FY043_RS23485 WP_060499986.1 4929078..4930448(-) (radA) [Pseudomonas monteilii strain 170620603RE]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETIIESGGSAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=383315 FY043_RS23485 WP_060499986.1 4929078..4930448(-) (radA) [Pseudomonas monteilii strain 170620603RE]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAAACCATCATCGAGAGCGGCGGCTCAGCGGCGCCCAGCAGCGGCCGCGCCGGCTGGA
CCGGGCAGCAGGCACAGATCAAGACCTTGGCCGAAGTCAGCGTCGAGGAAATCCCGCGCTTCACCACCAGCAGCACCGAA
TTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTGGTGCTGATTGGTGGCGACCCCGGCATCGGCAAGTCGAC
CATCCTGTTGCAGACCTTGTGCAACATCGCCGTGGGCATGCCGGCACTGTATGTGACGGGTGAGGAATCGCAGCAGCAGG
TGGCCATGCGTTCGCGGCGCCTGGGCTTGCCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATCGAGACCATCATT
GCCACAGCCCGCGTCGAGAAGCCACGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCAGC
GCCCGGTGGCGTGGCCCAGGTGCGTGAGAGCACGGCGCTGCTGGTGCGTTACGCCAAGCAAAGCGGCACGGCCATCTTCC
TGGTCGGCCATGTGACCAAGGAAGGCTCGCTGGCCGGCCCTCGGGTACTGGAGCACATGGTCGACACCGTGTTGTATTTC
GAGGGGGAGTCCGATGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCAGTCAACGAACTGGGTGTGTT
CGGCATGACCGACCGCGGCCTGAAAGAGGTGTCCAACCCGTCGGCGATCTTCCTCAACCGTACCCAGGAAGAAGTGCCGG
GCAGTGTGGTGATGGCGACCTGGGAGGGCACCCGCCCGATGCTGGTCGAGGTGCAGGCACTGGTCGACGACAGCCACCTG
GCCAACCCTCGGCGGGTGACCCTGGGCCTGGACCAGAACCGCCTGGCCATGTTGTTGGCGGTGTTGCACCGCCACGGTGG
GATTCCTACCCACGATCAGGACGTGTTCCTCAACGTGGTGGGGGGGGTGAAGGTGTTGGAGACGGCCTCGGACCTGGCGT
TGCTGGCGGCGGTGATGTCCAGCTTGCGTAACCGGCCACTCGCCCATGGGCTGCTGGTGTTTGGCGAGATTGGCTTGTCG
GGCGAGGTGCGGCCTGTGCCCAGTGGGCAGGAGCGGTTGAAGGAGGCGGCCAAGCACGGTTTCAAGCGTGCCATCGTGCC
CAAGGGCAATGCGCCGAAAGAACCGCCAGCGGGGTTGCAGGTGATTGCCGTAACCCGGCTGGAGCAGGCCCTGGATGCAT
TGTTCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6V4S1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

100

0.485
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus mitis SK321

46.272

100

0.463
  radA Streptococcus mitis NCTC 12261

46.053

100

0.461

Multiple sequence alignment